Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1554 and Rru_A1555 are separated by 873 nucleotides Rru_A1555 and Rru_A1556 overlap by 10 nucleotides Rru_A1556 and Rru_A1557 are separated by 37 nucleotides
Rru_A1554: Rru_A1554 - chemotaxis sensory transducer (NCBI), at 1,833,839 to 1,835,326
_A1554
Rru_A1555: Rru_A1555 - NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (NCBI), at 1,836,200 to 1,836,565
_A1555
Rru_A1556: Rru_A1556 - NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI), at 1,836,556 to 1,837,113
_A1556
Rru_A1557: Rru_A1557 - NADH (or F420H2) dehydrogenase, subunit C (NCBI), at 1,837,151 to 1,837,792
_A1557
Position (kb)
1836
1837 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1835.319 kb on - strand at 1835.332 kb on - strand at 1835.332 kb on - strand at 1835.332 kb on - strand at 1835.344 kb on + strand at 1835.345 kb on - strand at 1835.345 kb on - strand at 1835.361 kb on - strand at 1835.385 kb on + strand at 1835.544 kb on + strand at 1835.544 kb on + strand at 1835.544 kb on + strand at 1835.545 kb on - strand at 1835.545 kb on - strand at 1835.545 kb on - strand at 1835.545 kb on - strand at 1835.545 kb on - strand at 1835.549 kb on + strand at 1835.592 kb on + strand at 1835.593 kb on - strand at 1835.709 kb on + strand at 1835.709 kb on + strand at 1835.709 kb on + strand at 1835.847 kb on + strand at 1835.848 kb on - strand at 1835.970 kb on - strand at 1836.111 kb on + strand at 1837.130 kb on + strand at 1837.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,835,319 - +1.6 1,835,332 - +1.0 1,835,332 - -0.3 1,835,332 - -0.7 1,835,344 + -1.9 1,835,345 - +1.7 1,835,345 - -2.3 1,835,361 - -3.4 1,835,385 + -0.1 1,835,544 + -0.2 1,835,544 + -1.2 1,835,544 + -2.9 1,835,545 - -1.1 1,835,545 - +0.1 1,835,545 - -0.1 1,835,545 - -0.8 1,835,545 - -4.3 1,835,549 + -1.5 1,835,592 + +1.7 1,835,593 - -0.1 1,835,709 + -2.1 1,835,709 + +1.7 1,835,709 + -0.2 1,835,847 + -1.3 1,835,848 - -0.7 1,835,970 - +0.5 1,836,111 + -0.6 1,837,130 + -0.3 1,837,130 + -1.1
Or see this region's nucleotide sequence