Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1555

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1554 and Rru_A1555 are separated by 873 nucleotidesRru_A1555 and Rru_A1556 overlap by 10 nucleotidesRru_A1556 and Rru_A1557 are separated by 37 nucleotides Rru_A1554: Rru_A1554 - chemotaxis sensory transducer (NCBI), at 1,833,839 to 1,835,326 _A1554 Rru_A1555: Rru_A1555 - NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (NCBI), at 1,836,200 to 1,836,565 _A1555 Rru_A1556: Rru_A1556 - NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI), at 1,836,556 to 1,837,113 _A1556 Rru_A1557: Rru_A1557 - NADH (or F420H2) dehydrogenase, subunit C (NCBI), at 1,837,151 to 1,837,792 _A1557 Position (kb) 1836 1837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1835.319 kb on - strandat 1835.332 kb on - strandat 1835.332 kb on - strandat 1835.332 kb on - strandat 1835.344 kb on + strandat 1835.345 kb on - strandat 1835.345 kb on - strandat 1835.361 kb on - strandat 1835.385 kb on + strandat 1835.544 kb on + strandat 1835.544 kb on + strandat 1835.544 kb on + strandat 1835.545 kb on - strandat 1835.545 kb on - strandat 1835.545 kb on - strandat 1835.545 kb on - strandat 1835.545 kb on - strandat 1835.549 kb on + strandat 1835.592 kb on + strandat 1835.593 kb on - strandat 1835.709 kb on + strandat 1835.709 kb on + strandat 1835.709 kb on + strandat 1835.847 kb on + strandat 1835.848 kb on - strandat 1835.970 kb on - strandat 1836.111 kb on + strandat 1837.130 kb on + strandat 1837.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,835,319 - +1.6
1,835,332 - +1.0
1,835,332 - -0.3
1,835,332 - -0.7
1,835,344 + -1.9
1,835,345 - +1.7
1,835,345 - -2.3
1,835,361 - -3.4
1,835,385 + -0.1
1,835,544 + -0.2
1,835,544 + -1.2
1,835,544 + -2.9
1,835,545 - -1.1
1,835,545 - +0.1
1,835,545 - -0.1
1,835,545 - -0.8
1,835,545 - -4.3
1,835,549 + -1.5
1,835,592 + +1.7
1,835,593 - -0.1
1,835,709 + -2.1
1,835,709 + +1.7
1,835,709 + -0.2
1,835,847 + -1.3
1,835,848 - -0.7
1,835,970 - +0.5
1,836,111 + -0.6
1,837,130 + -0.3
1,837,130 + -1.1

Or see this region's nucleotide sequence