Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1551

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1550 and Rru_A1551 are separated by 369 nucleotidesRru_A1551 and Rru_A1552 are separated by 405 nucleotides Rru_A1550: Rru_A1550 - Endopeptidase Clp (NCBI), at 1,827,648 to 1,828,298 _A1550 Rru_A1551: Rru_A1551 - ClpX, ATPase regulatory subunit (NCBI), at 1,828,668 to 1,829,936 _A1551 Rru_A1552: Rru_A1552 - Peptidase S16, ATP-dependent protease La (NCBI), at 1,830,342 to 1,832,762 _A1552 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1828.297 kb on - strandat 1828.311 kb on + strandat 1828.544 kb on + strandat 1828.547 kb on + strandat 1829.896 kb on - strandat 1829.937 kb on + strandat 1829.937 kb on + strandat 1829.938 kb on - strandat 1829.938 kb on - strandat 1829.938 kb on - strandat 1829.938 kb on - strandat 1830.084 kb on - strandat 1830.540 kb on + strandat 1830.756 kb on + strand, within Rru_A1552at 1830.757 kb on - strand, within Rru_A1552at 1830.837 kb on - strand, within Rru_A1552

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,828,297 - +1.7
1,828,311 + +1.7
1,828,544 + +0.7
1,828,547 + -0.6
1,829,896 - +2.2
1,829,937 + +2.9
1,829,937 + +3.4
1,829,938 - +0.4
1,829,938 - -1.3
1,829,938 - +3.8
1,829,938 - -2.2
1,830,084 - +0.5
1,830,540 + -0.9
1,830,756 + Rru_A1552 0.17 +0.7
1,830,757 - Rru_A1552 0.17 -0.6
1,830,837 - Rru_A1552 0.20 +1.7

Or see this region's nucleotide sequence