Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1550

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1549 and Rru_A1550 are separated by 232 nucleotidesRru_A1550 and Rru_A1551 are separated by 369 nucleotides Rru_A1549: Rru_A1549 - Trigger factor (NCBI), at 1,826,024 to 1,827,415 _A1549 Rru_A1550: Rru_A1550 - Endopeptidase Clp (NCBI), at 1,827,648 to 1,828,298 _A1550 Rru_A1551: Rru_A1551 - ClpX, ATPase regulatory subunit (NCBI), at 1,828,668 to 1,829,936 _A1551 Position (kb) 1827 1828 1829Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1827.255 kb on - strand, within Rru_A1549at 1827.255 kb on - strand, within Rru_A1549at 1827.255 kb on - strand, within Rru_A1549at 1827.255 kb on - strand, within Rru_A1549at 1827.257 kb on + strand, within Rru_A1549at 1827.326 kb on - strandat 1827.326 kb on - strandat 1827.438 kb on + strandat 1827.438 kb on + strandat 1827.439 kb on - strandat 1827.439 kb on - strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.488 kb on + strandat 1827.492 kb on + strandat 1827.492 kb on + strandat 1827.492 kb on + strandat 1827.492 kb on + strandat 1827.492 kb on + strandat 1827.492 kb on + strandat 1827.492 kb on + strandat 1828.297 kb on - strandat 1828.311 kb on + strandat 1828.544 kb on + strandat 1828.547 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,827,255 - Rru_A1549 0.88 +2.6
1,827,255 - Rru_A1549 0.88 +0.7
1,827,255 - Rru_A1549 0.88 +3.3
1,827,255 - Rru_A1549 0.88 +1.7
1,827,257 + Rru_A1549 0.89 +1.7
1,827,326 - +3.0
1,827,326 - +2.3
1,827,438 + -1.3
1,827,438 + +1.7
1,827,439 - +3.3
1,827,439 - +3.6
1,827,488 + +4.1
1,827,488 + +4.1
1,827,488 + +3.5
1,827,488 + +2.4
1,827,488 + -1.2
1,827,488 + -0.6
1,827,488 + +2.7
1,827,488 + +4.0
1,827,492 + +1.7
1,827,492 + +2.8
1,827,492 + +2.1
1,827,492 + -2.3
1,827,492 + +1.0
1,827,492 + +0.7
1,827,492 + +1.7
1,828,297 - +1.7
1,828,311 + +1.7
1,828,544 + +0.7
1,828,547 + -0.6

Or see this region's nucleotide sequence