Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1520 and Rru_AR0027 are separated by 116 nucleotides Rru_AR0027 and Rru_A1521 are separated by 131 nucleotides Rru_A1521 and Rru_A1522 are separated by 275 nucleotides Rru_A1522 and Rru_A1523 are separated by 98 nucleotides
Rru_A1520: Rru_A1520 - hypothetical protein (NCBI), at 1,791,953 to 1,792,159
_A1520
Rru_AR0027: Rru_AR0027 - tRNA-Glu (NCBI), at 1,792,276 to 1,792,351
_AR0027
Rru_A1521: Rru_A1521 - Cold-shock DNA-binding domain protein (NCBI), at 1,792,483 to 1,792,689
_A1521
Rru_A1522: Rru_A1522 - Beta-lactamase-like (NCBI), at 1,792,965 to 1,793,609
_A1522
Rru_A1523: Rru_A1523 - Hemerythrin (NCBI), at 1,793,708 to 1,794,496
_A1523
Position (kb)
1792
1793
1794 Strain fitness (log2 ratio)
-2
-1
0
1 at 1791.976 kb on + strand, within Rru_A1520 at 1792.057 kb on + strand, within Rru_A1520 at 1792.223 kb on + strand at 1792.984 kb on + strand at 1792.984 kb on + strand at 1792.984 kb on + strand at 1792.985 kb on - strand at 1792.985 kb on - strand at 1792.985 kb on - strand at 1794.132 kb on + strand, within Rru_A1523 at 1794.323 kb on + strand, within Rru_A1523 at 1794.324 kb on - strand, within Rru_A1523 at 1794.324 kb on - strand, within Rru_A1523 at 1794.600 kb on + strand at 1794.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,791,976 + Rru_A1520 0.11 -0.9 1,792,057 + Rru_A1520 0.50 -1.1 1,792,223 + -0.6 1,792,984 + -0.9 1,792,984 + -1.7 1,792,984 + -0.3 1,792,985 - -0.3 1,792,985 - -2.0 1,792,985 - -2.1 1,794,132 + Rru_A1523 0.54 -1.1 1,794,323 + Rru_A1523 0.78 -1.7 1,794,324 - Rru_A1523 0.78 -1.5 1,794,324 - Rru_A1523 0.78 -0.5 1,794,600 + -0.6 1,794,601 - -1.3
Or see this region's nucleotide sequence