Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1522

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1520 and Rru_AR0027 are separated by 116 nucleotidesRru_AR0027 and Rru_A1521 are separated by 131 nucleotidesRru_A1521 and Rru_A1522 are separated by 275 nucleotidesRru_A1522 and Rru_A1523 are separated by 98 nucleotides Rru_A1520: Rru_A1520 - hypothetical protein (NCBI), at 1,791,953 to 1,792,159 _A1520 Rru_AR0027: Rru_AR0027 - tRNA-Glu (NCBI), at 1,792,276 to 1,792,351 _AR0027 Rru_A1521: Rru_A1521 - Cold-shock DNA-binding domain protein (NCBI), at 1,792,483 to 1,792,689 _A1521 Rru_A1522: Rru_A1522 - Beta-lactamase-like (NCBI), at 1,792,965 to 1,793,609 _A1522 Rru_A1523: Rru_A1523 - Hemerythrin (NCBI), at 1,793,708 to 1,794,496 _A1523 Position (kb) 1792 1793 1794Strain fitness (log2 ratio) -2 -1 0 1at 1791.976 kb on + strand, within Rru_A1520at 1792.057 kb on + strand, within Rru_A1520at 1792.223 kb on + strandat 1792.984 kb on + strandat 1792.984 kb on + strandat 1792.984 kb on + strandat 1792.985 kb on - strandat 1792.985 kb on - strandat 1792.985 kb on - strandat 1794.132 kb on + strand, within Rru_A1523at 1794.323 kb on + strand, within Rru_A1523at 1794.324 kb on - strand, within Rru_A1523at 1794.324 kb on - strand, within Rru_A1523at 1794.600 kb on + strandat 1794.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,791,976 + Rru_A1520 0.11 -0.9
1,792,057 + Rru_A1520 0.50 -1.1
1,792,223 + -0.6
1,792,984 + -0.9
1,792,984 + -1.7
1,792,984 + -0.3
1,792,985 - -0.3
1,792,985 - -2.0
1,792,985 - -2.1
1,794,132 + Rru_A1523 0.54 -1.1
1,794,323 + Rru_A1523 0.78 -1.7
1,794,324 - Rru_A1523 0.78 -1.5
1,794,324 - Rru_A1523 0.78 -0.5
1,794,600 + -0.6
1,794,601 - -1.3

Or see this region's nucleotide sequence