Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1468 and Rru_A1469 are separated by 111 nucleotides Rru_A1469 and Rru_A1470 are separated by 3 nucleotides Rru_A1470 and Rru_A1471 are separated by 73 nucleotides
Rru_A1468: Rru_A1468 - Phosphate butyryltransferase (NCBI), at 1,734,502 to 1,735,938
_A1468
Rru_A1469: Rru_A1469 - Acetyl-CoA C-acetyltransferase (NCBI), at 1,736,050 to 1,737,225
_A1469
Rru_A1470: Rru_A1470 - hypothetical protein (NCBI), at 1,737,229 to 1,737,510
_A1470
Rru_A1471: Rru_A1471 - Butyrate-acetoacetate CoA-transferase (NCBI), at 1,737,584 to 1,738,243
_A1471
Position (kb)
1736
1737
1738 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1735.135 kb on - strand, within Rru_A1468 at 1735.597 kb on + strand, within Rru_A1468 at 1735.598 kb on - strand, within Rru_A1468 at 1735.615 kb on - strand, within Rru_A1468 at 1735.661 kb on + strand, within Rru_A1468 at 1735.662 kb on - strand, within Rru_A1468 at 1735.662 kb on - strand, within Rru_A1468 at 1735.662 kb on - strand, within Rru_A1468 at 1736.051 kb on + strand at 1736.051 kb on + strand at 1736.052 kb on - strand at 1736.052 kb on - strand at 1736.402 kb on - strand, within Rru_A1469 at 1737.144 kb on + strand at 1737.435 kb on + strand, within Rru_A1470 at 1737.436 kb on - strand, within Rru_A1470 at 1737.559 kb on + strand at 1737.812 kb on - strand, within Rru_A1471 at 1738.143 kb on + strand, within Rru_A1471 at 1738.143 kb on + strand, within Rru_A1471 at 1738.143 kb on + strand, within Rru_A1471 at 1738.144 kb on - strand, within Rru_A1471 at 1738.144 kb on - strand, within Rru_A1471
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,735,135 - Rru_A1468 0.44 -1.1 1,735,597 + Rru_A1468 0.76 -3.2 1,735,598 - Rru_A1468 0.76 -0.1 1,735,615 - Rru_A1468 0.77 -1.5 1,735,661 + Rru_A1468 0.81 +1.7 1,735,662 - Rru_A1468 0.81 +0.9 1,735,662 - Rru_A1468 0.81 -1.5 1,735,662 - Rru_A1468 0.81 +0.7 1,736,051 + +1.7 1,736,051 + +0.2 1,736,052 - -0.5 1,736,052 - -0.6 1,736,402 - Rru_A1469 0.30 +0.7 1,737,144 + -1.9 1,737,435 + Rru_A1470 0.73 -0.4 1,737,436 - Rru_A1470 0.73 -0.7 1,737,559 + -1.7 1,737,812 - Rru_A1471 0.35 -0.9 1,738,143 + Rru_A1471 0.85 -0.7 1,738,143 + Rru_A1471 0.85 -2.2 1,738,143 + Rru_A1471 0.85 -0.3 1,738,144 - Rru_A1471 0.85 +0.4 1,738,144 - Rru_A1471 0.85 -2.1
Or see this region's nucleotide sequence