Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1469

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1468 and Rru_A1469 are separated by 111 nucleotidesRru_A1469 and Rru_A1470 are separated by 3 nucleotidesRru_A1470 and Rru_A1471 are separated by 73 nucleotides Rru_A1468: Rru_A1468 - Phosphate butyryltransferase (NCBI), at 1,734,502 to 1,735,938 _A1468 Rru_A1469: Rru_A1469 - Acetyl-CoA C-acetyltransferase (NCBI), at 1,736,050 to 1,737,225 _A1469 Rru_A1470: Rru_A1470 - hypothetical protein (NCBI), at 1,737,229 to 1,737,510 _A1470 Rru_A1471: Rru_A1471 - Butyrate-acetoacetate CoA-transferase (NCBI), at 1,737,584 to 1,738,243 _A1471 Position (kb) 1736 1737 1738Strain fitness (log2 ratio) -3 -2 -1 0 1at 1735.135 kb on - strand, within Rru_A1468at 1735.597 kb on + strand, within Rru_A1468at 1735.598 kb on - strand, within Rru_A1468at 1735.615 kb on - strand, within Rru_A1468at 1735.661 kb on + strand, within Rru_A1468at 1735.662 kb on - strand, within Rru_A1468at 1735.662 kb on - strand, within Rru_A1468at 1735.662 kb on - strand, within Rru_A1468at 1736.051 kb on + strandat 1736.051 kb on + strandat 1736.052 kb on - strandat 1736.052 kb on - strandat 1736.402 kb on - strand, within Rru_A1469at 1737.144 kb on + strandat 1737.435 kb on + strand, within Rru_A1470at 1737.436 kb on - strand, within Rru_A1470at 1737.559 kb on + strandat 1737.812 kb on - strand, within Rru_A1471at 1738.143 kb on + strand, within Rru_A1471at 1738.143 kb on + strand, within Rru_A1471at 1738.143 kb on + strand, within Rru_A1471at 1738.144 kb on - strand, within Rru_A1471at 1738.144 kb on - strand, within Rru_A1471

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,735,135 - Rru_A1468 0.44 -1.1
1,735,597 + Rru_A1468 0.76 -3.2
1,735,598 - Rru_A1468 0.76 -0.1
1,735,615 - Rru_A1468 0.77 -1.5
1,735,661 + Rru_A1468 0.81 +1.7
1,735,662 - Rru_A1468 0.81 +0.9
1,735,662 - Rru_A1468 0.81 -1.5
1,735,662 - Rru_A1468 0.81 +0.7
1,736,051 + +1.7
1,736,051 + +0.2
1,736,052 - -0.5
1,736,052 - -0.6
1,736,402 - Rru_A1469 0.30 +0.7
1,737,144 + -1.9
1,737,435 + Rru_A1470 0.73 -0.4
1,737,436 - Rru_A1470 0.73 -0.7
1,737,559 + -1.7
1,737,812 - Rru_A1471 0.35 -0.9
1,738,143 + Rru_A1471 0.85 -0.7
1,738,143 + Rru_A1471 0.85 -2.2
1,738,143 + Rru_A1471 0.85 -0.3
1,738,144 - Rru_A1471 0.85 +0.4
1,738,144 - Rru_A1471 0.85 -2.1

Or see this region's nucleotide sequence