Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1465

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1463 and Rru_A1464 overlap by 4 nucleotidesRru_A1464 and Rru_A1465 are separated by 25 nucleotidesRru_A1465 and Rru_A1466 are separated by 146 nucleotides Rru_A1463: Rru_A1463 - Sulfotransferase (NCBI), at 1,729,955 to 1,730,797 _A1463 Rru_A1464: Rru_A1464 - HPr kinase (NCBI), at 1,730,794 to 1,731,696 _A1464 Rru_A1465: Rru_A1465 - hypothetical protein (NCBI), at 1,731,722 to 1,732,039 _A1465 Rru_A1466: Rru_A1466 - Transcriptional Regulator, LysR family (NCBI), at 1,732,186 to 1,733,130 _A1466 Position (kb) 1731 1732 1733Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1731.024 kb on + strand, within Rru_A1464at 1731.026 kb on + strand, within Rru_A1464at 1731.026 kb on + strand, within Rru_A1464at 1731.027 kb on - strand, within Rru_A1464at 1731.027 kb on - strand, within Rru_A1464at 1731.027 kb on - strand, within Rru_A1464at 1731.820 kb on + strand, within Rru_A1465at 1731.821 kb on - strand, within Rru_A1465at 1731.821 kb on - strand, within Rru_A1465at 1731.861 kb on - strand, within Rru_A1465at 1731.903 kb on + strand, within Rru_A1465at 1731.903 kb on + strand, within Rru_A1465at 1731.904 kb on - strand, within Rru_A1465at 1731.904 kb on - strand, within Rru_A1465at 1731.904 kb on - strand, within Rru_A1465at 1731.904 kb on - strand, within Rru_A1465at 1731.904 kb on - strand, within Rru_A1465at 1732.413 kb on + strand, within Rru_A1466at 1732.760 kb on - strand, within Rru_A1466at 1732.760 kb on - strand, within Rru_A1466at 1732.789 kb on - strand, within Rru_A1466at 1732.861 kb on + strand, within Rru_A1466at 1732.861 kb on + strand, within Rru_A1466at 1732.861 kb on + strand, within Rru_A1466at 1732.861 kb on + strand, within Rru_A1466at 1732.861 kb on + strand, within Rru_A1466at 1732.862 kb on - strand, within Rru_A1466at 1732.862 kb on - strand, within Rru_A1466

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,731,024 + Rru_A1464 0.25 -2.1
1,731,026 + Rru_A1464 0.26 -1.3
1,731,026 + Rru_A1464 0.26 -0.4
1,731,027 - Rru_A1464 0.26 -1.4
1,731,027 - Rru_A1464 0.26 +0.1
1,731,027 - Rru_A1464 0.26 +1.3
1,731,820 + Rru_A1465 0.31 +1.1
1,731,821 - Rru_A1465 0.31 -2.3
1,731,821 - Rru_A1465 0.31 -0.3
1,731,861 - Rru_A1465 0.44 +4.0
1,731,903 + Rru_A1465 0.57 +1.3
1,731,903 + Rru_A1465 0.57 +1.5
1,731,904 - Rru_A1465 0.57 -2.7
1,731,904 - Rru_A1465 0.57 +0.1
1,731,904 - Rru_A1465 0.57 -2.5
1,731,904 - Rru_A1465 0.57 -1.3
1,731,904 - Rru_A1465 0.57 -1.5
1,732,413 + Rru_A1466 0.24 +1.4
1,732,760 - Rru_A1466 0.61 -1.7
1,732,760 - Rru_A1466 0.61 +2.3
1,732,789 - Rru_A1466 0.64 -3.1
1,732,861 + Rru_A1466 0.71 -0.2
1,732,861 + Rru_A1466 0.71 +3.4
1,732,861 + Rru_A1466 0.71 -1.8
1,732,861 + Rru_A1466 0.71 -3.0
1,732,861 + Rru_A1466 0.71 -0.6
1,732,862 - Rru_A1466 0.72 +0.7
1,732,862 - Rru_A1466 0.72 -2.4

Or see this region's nucleotide sequence