Strain Fitness in Rhodospirillum rubrum S1H around 11438799

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0837 and 11438784 overlap by 1091 nucleotides11438784 and 11581147 overlap by 35 nucleotides11581147 and 11723539 overlap by 35 nucleotides11723539 and 11438785 are separated by 0 nucleotides11438785 and 11581148 overlap by 31 nucleotides11581148 and 11723540 overlap by 31 nucleotides11723540 and 11438786 are separated by 0 nucleotides11438786 and 11581149 overlap by 35 nucleotides11581149 and 11723541 overlap by 35 nucleotides11723541 and 11438787 are separated by 0 nucleotides11438787 and 11581150 overlap by 31 nucleotides11581150 and 11723542 overlap by 31 nucleotides11723542 and 11438788 are separated by 0 nucleotides11438788 and 11581151 overlap by 35 nucleotides11581151 and 11723543 overlap by 35 nucleotides11723543 and 11438789 are separated by 0 nucleotides11438789 and 11581152 overlap by 31 nucleotides11581152 and 11723544 overlap by 31 nucleotides11723544 and 11438790 are separated by 0 nucleotides11438790 and 11581153 overlap by 35 nucleotides11581153 and 11723545 overlap by 35 nucleotides11723545 and 11438791 are separated by 0 nucleotides11438791 and 11581154 overlap by 31 nucleotides11581154 and 11723546 overlap by 31 nucleotides11723546 and 11438792 are separated by 0 nucleotides11438792 and 11581155 overlap by 35 nucleotides11581155 and 11723547 overlap by 35 nucleotides11723547 and 11438793 are separated by 0 nucleotides11438793 and 11581156 overlap by 40 nucleotides11581156 and 11723548 overlap by 40 nucleotides11723548 and 11438794 are separated by 0 nucleotides11438794 and 11581157 overlap by 35 nucleotides11581157 and 11723549 overlap by 35 nucleotides11723549 and 11438795 are separated by 0 nucleotides11438795 and 11581158 overlap by 31 nucleotides11581158 and 11723550 overlap by 31 nucleotides11723550 and 11438796 are separated by 0 nucleotides11438796 and 11581159 overlap by 35 nucleotides11581159 and 11723551 overlap by 35 nucleotides11723551 and 11438797 are separated by 0 nucleotides11438797 and 11581160 overlap by 31 nucleotides11581160 and 11723552 overlap by 31 nucleotides11723552 and 11438798 are separated by 0 nucleotides11438798 and 11581161 overlap by 35 nucleotides11581161 and 11723553 overlap by 35 nucleotides11723553 and 11438799 are separated by 0 nucleotides11438799 and 11581162 overlap by 31 nucleotides11581162 and 11723554 overlap by 31 nucleotides11723554 and 11438800 are separated by 0 nucleotides11438800 and 11581163 overlap by 35 nucleotides11581163 and 11723555 overlap by 35 nucleotides11723555 and 11438801 are separated by 0 nucleotides11438801 and 11581164 overlap by 31 nucleotides11581164 and 11723556 overlap by 31 nucleotides11723556 and 11438802 are separated by 0 nucleotides11438802 and 11581165 overlap by 35 nucleotides11581165 and 11723557 overlap by 35 nucleotides11723557 and 11438803 are separated by 0 nucleotides11438803 and 11581166 overlap by 31 nucleotides11581166 and 11723558 overlap by 31 nucleotides11723558 and 11438804 are separated by 0 nucleotides11438804 and 11581167 overlap by 35 nucleotides11581167 and 11723559 overlap by 35 nucleotides11723559 and 11438805 are separated by 0 nucleotides11438805 and 11581168 overlap by 31 nucleotides11581168 and 11723560 overlap by 31 nucleotides11723560 and 11438806 are separated by 0 nucleotides11438806 and 11581169 overlap by 35 nucleotides11581169 and 11723561 overlap by 35 nucleotides11723561 and 11438807 are separated by 0 nucleotides11438807 and 11581170 overlap by 31 nucleotides11581170 and 11723562 overlap by 31 nucleotides11723562 and 11438808 are separated by 0 nucleotides11438808 and 11581171 overlap by 35 nucleotides11581171 and 11723563 overlap by 35 nucleotides11723563 and Rru_A0838 are separated by 566 nucleotides Rru_A0837: Rru_A0837 - Leucine-rich repeat (NCBI), at 992,802 to 996,059 _A0837 11438784 - no description, at 994,969 to 995,003 11438784 11581147 - no description, at 994,969 to 995,003 11581147 11723539 - no description, at 994,969 to 995,003 11723539 11438785 - no description, at 995,004 to 995,034 11438785 11581148 - no description, at 995,004 to 995,034 11581148 11723540 - no description, at 995,004 to 995,034 11723540 11438786 - no description, at 995,035 to 995,069 11438786 11581149 - no description, at 995,035 to 995,069 11581149 11723541 - no description, at 995,035 to 995,069 11723541 11438787 - no description, at 995,070 to 995,100 11438787 11581150 - no description, at 995,070 to 995,100 11581150 11723542 - no description, at 995,070 to 995,100 11723542 11438788 - no description, at 995,101 to 995,135 11438788 11581151 - no description, at 995,101 to 995,135 11581151 11723543 - no description, at 995,101 to 995,135 11723543 11438789 - no description, at 995,136 to 995,166 11438789 11581152 - no description, at 995,136 to 995,166 11581152 11723544 - no description, at 995,136 to 995,166 11723544 11438790 - no description, at 995,167 to 995,201 11438790 11581153 - no description, at 995,167 to 995,201 11581153 11723545 - no description, at 995,167 to 995,201 11723545 11438791 - no description, at 995,202 to 995,232 11438791 11581154 - no description, at 995,202 to 995,232 11581154 11723546 - no description, at 995,202 to 995,232 11723546 11438792 - no description, at 995,233 to 995,267 11438792 11581155 - no description, at 995,233 to 995,267 11581155 11723547 - no description, at 995,233 to 995,267 11723547 11438793 - no description, at 995,268 to 995,307 11438793 11581156 - no description, at 995,268 to 995,307 11581156 11723548 - no description, at 995,268 to 995,307 11723548 11438794 - no description, at 995,308 to 995,342 11438794 11581157 - no description, at 995,308 to 995,342 11581157 11723549 - no description, at 995,308 to 995,342 11723549 11438795 - no description, at 995,343 to 995,373 11438795 11581158 - no description, at 995,343 to 995,373 11581158 11723550 - no description, at 995,343 to 995,373 11723550 11438796 - no description, at 995,374 to 995,408 11438796 11581159 - no description, at 995,374 to 995,408 11581159 11723551 - no description, at 995,374 to 995,408 11723551 11438797 - no description, at 995,409 to 995,439 11438797 11581160 - no description, at 995,409 to 995,439 11581160 11723552 - no description, at 995,409 to 995,439 11723552 11438798 - no description, at 995,440 to 995,474 11438798 11581161 - no description, at 995,440 to 995,474 11581161 11723553 - no description, at 995,440 to 995,474 11723553 11438799 - no description, at 995,475 to 995,505 11438799 11581162 - no description, at 995,475 to 995,505 11581162 11723554 - no description, at 995,475 to 995,505 11723554 11438800 - no description, at 995,506 to 995,540 11438800 11581163 - no description, at 995,506 to 995,540 11581163 11723555 - no description, at 995,506 to 995,540 11723555 11438801 - no description, at 995,541 to 995,571 11438801 11581164 - no description, at 995,541 to 995,571 11581164 11723556 - no description, at 995,541 to 995,571 11723556 11438802 - no description, at 995,572 to 995,606 11438802 11581165 - no description, at 995,572 to 995,606 11581165 11723557 - no description, at 995,572 to 995,606 11723557 11438803 - no description, at 995,607 to 995,637 11438803 11581166 - no description, at 995,607 to 995,637 11581166 11723558 - no description, at 995,607 to 995,637 11723558 11438804 - no description, at 995,638 to 995,672 11438804 11581167 - no description, at 995,638 to 995,672 11581167 11723559 - no description, at 995,638 to 995,672 11723559 11438805 - no description, at 995,673 to 995,703 11438805 11581168 - no description, at 995,673 to 995,703 11581168 11723560 - no description, at 995,673 to 995,703 11723560 11438806 - no description, at 995,704 to 995,738 11438806 11581169 - no description, at 995,704 to 995,738 11581169 11723561 - no description, at 995,704 to 995,738 11723561 11438807 - no description, at 995,739 to 995,769 11438807 11581170 - no description, at 995,739 to 995,769 11581170 11723562 - no description, at 995,739 to 995,769 11723562 11438808 - no description, at 995,770 to 995,804 11438808 11581171 - no description, at 995,770 to 995,804 11581171 11723563 - no description, at 995,770 to 995,804 11723563 Rru_A0838: Rru_A0838 - TonB-dependent receptor (NCBI), at 996,371 to 998,386 _A0838 Position (kb) 995 996Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 994.534 kb on + strand, within Rru_A0837at 994.534 kb on + strand, within Rru_A0837at 994.535 kb on - strand, within Rru_A0837at 994.535 kb on - strand, within Rru_A0837at 994.535 kb on - strand, within Rru_A0837at 994.576 kb on + strand, within Rru_A0837at 994.576 kb on + strand, within Rru_A0837at 994.576 kb on + strand, within Rru_A0837at 994.577 kb on - strand, within Rru_A0837at 995.013 kb on - strandat 995.018 kb on - strandat 995.070 kb on + strandat 995.070 kb on + strandat 995.070 kb on + strandat 995.070 kb on + strandat 995.070 kb on + strandat 995.071 kb on - strandat 995.071 kb on - strandat 995.137 kb on - strandat 995.137 kb on - strandat 995.137 kb on - strandat 995.211 kb on - strandat 995.211 kb on - strandat 995.291 kb on + strandat 995.328 kb on + strandat 995.328 kb on + strandat 995.329 kb on - strandat 995.329 kb on - strandat 995.329 kb on - strandat 995.461 kb on - strandat 995.550 kb on - strandat 995.555 kb on - strandat 995.725 kb on - strandat 995.725 kb on - strandat 995.752 kb on + strandat 995.753 kb on - strandat 995.753 kb on - strandat 995.823 kb on + strandat 995.823 kb on + strandat 996.077 kb on + strandat 996.113 kb on - strandat 996.135 kb on - strandat 996.304 kb on + strandat 996.304 kb on + strandat 996.304 kb on + strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.307 kb on - strandat 996.307 kb on - strandat 996.444 kb on + strandat 996.445 kb on - strandat 996.445 kb on - strandat 996.445 kb on - strandat 996.446 kb on + strandat 996.446 kb on + strandat 996.447 kb on - strandat 996.447 kb on - strandat 996.453 kb on + strandat 996.454 kb on - strandat 996.472 kb on + strandat 996.473 kb on - strandat 996.480 kb on + strandat 996.481 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
994,534 + Rru_A0837 0.53 +2.0
994,534 + Rru_A0837 0.53 -0.8
994,535 - Rru_A0837 0.53 +1.1
994,535 - Rru_A0837 0.53 +0.8
994,535 - Rru_A0837 0.53 -2.4
994,576 + Rru_A0837 0.54 -0.0
994,576 + Rru_A0837 0.54 +0.5
994,576 + Rru_A0837 0.54 -0.2
994,577 - Rru_A0837 0.54 -3.5
995,013 - +3.4
995,018 - -2.6
995,070 + -0.4
995,070 + -1.4
995,070 + +2.1
995,070 + -0.8
995,070 + +0.5
995,071 - +1.7
995,071 - -1.0
995,137 - -0.8
995,137 - +0.7
995,137 - -0.2
995,211 - -3.3
995,211 - +1.8
995,291 + +0.2
995,328 + -3.8
995,328 + -1.7
995,329 - -0.8
995,329 - -0.5
995,329 - -2.8
995,461 - -0.6
995,550 - +1.3
995,555 - -0.4
995,725 - +0.4
995,725 - +0.4
995,752 + -0.3
995,753 - +1.2
995,753 - -2.0
995,823 + -0.6
995,823 + +0.5
996,077 + -2.2
996,113 - +1.3
996,135 - -0.8
996,304 + +0.3
996,304 + -0.3
996,304 + -2.0
996,305 - -2.5
996,305 - +1.5
996,305 - +0.8
996,305 - -0.7
996,305 - -0.5
996,305 - +0.1
996,305 - +1.8
996,306 + -0.7
996,306 + -1.9
996,306 + +2.5
996,306 + +0.2
996,306 + -0.2
996,306 + +2.0
996,307 - -1.2
996,307 - -0.4
996,444 + -0.2
996,445 - -1.2
996,445 - -0.3
996,445 - +0.8
996,446 + +0.7
996,446 + -0.5
996,447 - -0.0
996,447 - +1.1
996,453 + -1.9
996,454 - +1.0
996,472 + -2.0
996,473 - -2.5
996,480 + -1.0
996,481 - +1.0

Or see this region's nucleotide sequence