Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1330 and Rru_A1331 are separated by 254 nucleotides Rru_A1331 and Rru_A1332 overlap by 4 nucleotides Rru_A1332 and Rru_A1333 are separated by 68 nucleotides Rru_A1333 and Rru_A1334 are separated by 222 nucleotides
Rru_A1330: Rru_A1330 - Malonate/sodium symporter MadM subunit (NCBI), at 1,567,199 to 1,567,972
_A1330
Rru_A1331: Rru_A1331 - ABC transporter component (NCBI), at 1,568,227 to 1,568,907
_A1331
Rru_A1332: Rru_A1332 - Cobalt transport protein (NCBI), at 1,568,904 to 1,569,629
_A1332
Rru_A1333: Rru_A1333 - BioY protein (NCBI), at 1,569,698 to 1,570,132
_A1333
Rru_A1334: Rru_A1334 - Ribose 5-phosphate isomerase B (NCBI), at 1,570,355 to 1,570,801
_A1334
Position (kb) 1568
1569
1570 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1567.904 kb on + strand at 1567.905 kb on - strand at 1567.905 kb on - strand at 1567.905 kb on - strand at 1567.905 kb on - strand at 1567.943 kb on + strand at 1567.944 kb on - strand at 1568.026 kb on - strand at 1568.888 kb on - strand at 1568.888 kb on - strand at 1569.965 kb on + strand, within Rru_A1333 at 1569.968 kb on - strand, within Rru_A1333 at 1569.968 kb on - strand, within Rru_A1333 at 1570.153 kb on - strand at 1570.192 kb on + strand at 1570.356 kb on + strand at 1570.533 kb on + strand, within Rru_A1334 at 1570.533 kb on + strand, within Rru_A1334 at 1570.534 kb on - strand, within Rru_A1334 at 1570.534 kb on - strand, within Rru_A1334 at 1570.534 kb on - strand, within Rru_A1334 at 1570.574 kb on - strand, within Rru_A1334
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,567,904 + -1.6 1,567,905 - -0.3 1,567,905 - -2.2 1,567,905 - -3.0 1,567,905 - -0.8 1,567,943 + +0.4 1,567,944 - +0.1 1,568,026 - -0.1 1,568,888 - +0.7 1,568,888 - -3.0 1,569,965 + Rru_A1333 0.61 +0.7 1,569,968 - Rru_A1333 0.62 +0.4 1,569,968 - Rru_A1333 0.62 +1.2 1,570,153 - -0.9 1,570,192 + +3.2 1,570,356 + +0.9 1,570,533 + Rru_A1334 0.40 -1.9 1,570,533 + Rru_A1334 0.40 +0.9 1,570,534 - Rru_A1334 0.40 -4.1 1,570,534 - Rru_A1334 0.40 +0.8 1,570,534 - Rru_A1334 0.40 +0.0 1,570,574 - Rru_A1334 0.49 +3.3
Or see this region's nucleotide sequence