Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1266

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1265 and Rru_A1266 are separated by 51 nucleotidesRru_A1266 and Rru_A1267 are separated by 58 nucleotides Rru_A1265: Rru_A1265 - Transcriptional Regulator, DeoR family (NCBI), at 1,486,267 to 1,487,124 _A1265 Rru_A1266: Rru_A1266 - Photosystem I assembly BtpA (NCBI), at 1,487,176 to 1,487,979 _A1266 Rru_A1267: Rru_A1267 - Carbohydrate kinase, FGGY (NCBI), at 1,488,038 to 1,489,543 _A1267 Position (kb) 1487 1488Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1486.606 kb on + strand, within Rru_A1265at 1486.748 kb on - strand, within Rru_A1265at 1486.882 kb on + strand, within Rru_A1265at 1487.004 kb on + strand, within Rru_A1265at 1488.528 kb on - strand, within Rru_A1267at 1488.533 kb on + strand, within Rru_A1267at 1488.756 kb on - strand, within Rru_A1267at 1488.756 kb on - strand, within Rru_A1267at 1488.890 kb on + strand, within Rru_A1267at 1488.891 kb on - strand, within Rru_A1267at 1488.899 kb on + strand, within Rru_A1267at 1488.900 kb on - strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267at 1488.920 kb on + strand, within Rru_A1267

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,486,606 + Rru_A1265 0.40 +0.9
1,486,748 - Rru_A1265 0.56 -2.4
1,486,882 + Rru_A1265 0.72 +0.7
1,487,004 + Rru_A1265 0.86 +0.0
1,488,528 - Rru_A1267 0.33 +1.0
1,488,533 + Rru_A1267 0.33 +1.5
1,488,756 - Rru_A1267 0.48 -0.5
1,488,756 - Rru_A1267 0.48 +1.6
1,488,890 + Rru_A1267 0.57 -2.9
1,488,891 - Rru_A1267 0.57 -0.1
1,488,899 + Rru_A1267 0.57 +2.4
1,488,900 - Rru_A1267 0.57 +0.2
1,488,920 + Rru_A1267 0.59 +1.7
1,488,920 + Rru_A1267 0.59 +1.4
1,488,920 + Rru_A1267 0.59 +3.0
1,488,920 + Rru_A1267 0.59 +1.0
1,488,920 + Rru_A1267 0.59 -1.6
1,488,920 + Rru_A1267 0.59 +0.7
1,488,920 + Rru_A1267 0.59 -1.2
1,488,920 + Rru_A1267 0.59 +1.5

Or see this region's nucleotide sequence