Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1242

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1240 and Rru_A1241 are separated by 200 nucleotidesRru_A1241 and Rru_A1242 are separated by 54 nucleotidesRru_A1242 and Rru_AR0026 are separated by 283 nucleotidesRru_AR0026 and Rru_A1243 are separated by 139 nucleotides Rru_A1240: Rru_A1240 - GTP-binding protein (NCBI), at 1,463,132 to 1,464,307 _A1240 Rru_A1241: Rru_A1241 - Ribosomal protein L27 (NCBI), at 1,464,508 to 1,464,765 _A1241 Rru_A1242: Rru_A1242 - Ribosomal protein L21 (NCBI), at 1,464,820 to 1,465,122 _A1242 Rru_AR0026: Rru_AR0026 - tRNA-Ser (NCBI), at 1,465,406 to 1,465,495 _AR0026 Rru_A1243: Rru_A1243 - Cytochrome B561 (NCBI), at 1,465,635 to 1,466,303 _A1243 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1464.346 kb on - strandat 1464.348 kb on - strandat 1464.348 kb on - strandat 1464.348 kb on - strandat 1464.363 kb on - strandat 1465.151 kb on - strandat 1465.257 kb on + strandat 1465.258 kb on - strandat 1465.319 kb on + strandat 1465.849 kb on - strand, within Rru_A1243at 1465.849 kb on - strand, within Rru_A1243at 1465.879 kb on + strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1466.041 kb on + strand, within Rru_A1243

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,464,346 - -0.1
1,464,348 - +0.8
1,464,348 - -1.0
1,464,348 - -0.5
1,464,363 - -0.4
1,465,151 - -1.4
1,465,257 + +3.8
1,465,258 - -3.0
1,465,319 + +0.8
1,465,849 - Rru_A1243 0.32 +0.3
1,465,849 - Rru_A1243 0.32 -0.9
1,465,879 + Rru_A1243 0.36 -1.6
1,465,880 - Rru_A1243 0.37 +1.0
1,465,880 - Rru_A1243 0.37 -4.0
1,465,880 - Rru_A1243 0.37 -2.0
1,465,880 - Rru_A1243 0.37 -2.9
1,465,880 - Rru_A1243 0.37 -0.8
1,466,041 + Rru_A1243 0.61 +0.8

Or see this region's nucleotide sequence