Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1240 and Rru_A1241 are separated by 200 nucleotides Rru_A1241 and Rru_A1242 are separated by 54 nucleotides Rru_A1242 and Rru_AR0026 are separated by 283 nucleotides Rru_AR0026 and Rru_A1243 are separated by 139 nucleotides
Rru_A1240: Rru_A1240 - GTP-binding protein (NCBI), at 1,463,132 to 1,464,307
_A1240
Rru_A1241: Rru_A1241 - Ribosomal protein L27 (NCBI), at 1,464,508 to 1,464,765
_A1241
Rru_A1242: Rru_A1242 - Ribosomal protein L21 (NCBI), at 1,464,820 to 1,465,122
_A1242
Rru_AR0026: Rru_AR0026 - tRNA-Ser (NCBI), at 1,465,406 to 1,465,495
_AR0026
Rru_A1243: Rru_A1243 - Cytochrome B561 (NCBI), at 1,465,635 to 1,466,303
_A1243
Position (kb)
1464
1465
1466 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1464.346 kb on - strand at 1464.348 kb on - strand at 1464.348 kb on - strand at 1464.348 kb on - strand at 1464.363 kb on - strand at 1465.151 kb on - strand at 1465.257 kb on + strand at 1465.258 kb on - strand at 1465.319 kb on + strand at 1465.849 kb on - strand, within Rru_A1243 at 1465.849 kb on - strand, within Rru_A1243 at 1465.879 kb on + strand, within Rru_A1243 at 1465.880 kb on - strand, within Rru_A1243 at 1465.880 kb on - strand, within Rru_A1243 at 1465.880 kb on - strand, within Rru_A1243 at 1465.880 kb on - strand, within Rru_A1243 at 1465.880 kb on - strand, within Rru_A1243 at 1466.041 kb on + strand, within Rru_A1243
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,464,346 - -0.1 1,464,348 - +0.8 1,464,348 - -1.0 1,464,348 - -0.5 1,464,363 - -0.4 1,465,151 - -1.4 1,465,257 + +3.8 1,465,258 - -3.0 1,465,319 + +0.8 1,465,849 - Rru_A1243 0.32 +0.3 1,465,849 - Rru_A1243 0.32 -0.9 1,465,879 + Rru_A1243 0.36 -1.6 1,465,880 - Rru_A1243 0.37 +1.0 1,465,880 - Rru_A1243 0.37 -4.0 1,465,880 - Rru_A1243 0.37 -2.0 1,465,880 - Rru_A1243 0.37 -2.9 1,465,880 - Rru_A1243 0.37 -0.8 1,466,041 + Rru_A1243 0.61 +0.8
Or see this region's nucleotide sequence