Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1240

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1239 and Rru_A1240 are separated by 53 nucleotidesRru_A1240 and Rru_A1241 are separated by 200 nucleotidesRru_A1241 and Rru_A1242 are separated by 54 nucleotides Rru_A1239: Rru_A1239 - Glutamate 5-kinase, ProB-related (NCBI), at 1,461,951 to 1,463,078 _A1239 Rru_A1240: Rru_A1240 - GTP-binding protein (NCBI), at 1,463,132 to 1,464,307 _A1240 Rru_A1241: Rru_A1241 - Ribosomal protein L27 (NCBI), at 1,464,508 to 1,464,765 _A1241 Rru_A1242: Rru_A1242 - Ribosomal protein L21 (NCBI), at 1,464,820 to 1,465,122 _A1242 Position (kb) 1463 1464 1465Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1462.572 kb on - strand, within Rru_A1239at 1462.717 kb on - strand, within Rru_A1239at 1462.757 kb on - strand, within Rru_A1239at 1463.233 kb on + strandat 1463.234 kb on - strandat 1463.236 kb on - strandat 1464.346 kb on - strandat 1464.348 kb on - strandat 1464.348 kb on - strandat 1464.348 kb on - strandat 1464.363 kb on - strandat 1465.151 kb on - strandat 1465.257 kb on + strandat 1465.258 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,462,572 - Rru_A1239 0.55 -0.5
1,462,717 - Rru_A1239 0.68 -1.0
1,462,757 - Rru_A1239 0.71 -1.0
1,463,233 + +1.8
1,463,234 - -1.4
1,463,236 - -1.9
1,464,346 - -0.1
1,464,348 - +0.8
1,464,348 - -1.0
1,464,348 - -0.5
1,464,363 - -0.4
1,465,151 - -1.4
1,465,257 + +3.8
1,465,258 - -3.0

Or see this region's nucleotide sequence