Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1238

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1236 and Rru_A1237 are separated by 31 nucleotidesRru_A1237 and Rru_A1238 are separated by 24 nucleotidesRru_A1238 and Rru_A1239 overlap by 4 nucleotides Rru_A1236: Rru_A1236 - Iojap-related protein (NCBI), at 1,459,518 to 1,459,934 _A1236 Rru_A1237: Rru_A1237 - Cytidylyltransferase (NCBI), at 1,459,966 to 1,460,646 _A1237 Rru_A1238: Rru_A1238 - Gamma-glutamyl phosphate reductase GPR (NCBI), at 1,460,671 to 1,461,954 _A1238 Rru_A1239: Rru_A1239 - Glutamate 5-kinase, ProB-related (NCBI), at 1,461,951 to 1,463,078 _A1239 Position (kb) 1460 1461 1462Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1459.968 kb on - strandat 1459.968 kb on - strandat 1460.706 kb on - strandat 1461.229 kb on - strand, within Rru_A1238at 1461.229 kb on - strand, within Rru_A1238at 1462.112 kb on - strand, within Rru_A1239at 1462.572 kb on - strand, within Rru_A1239at 1462.717 kb on - strand, within Rru_A1239at 1462.757 kb on - strand, within Rru_A1239

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,459,968 - -1.6
1,459,968 - +0.9
1,460,706 - +5.7
1,461,229 - Rru_A1238 0.43 -1.0
1,461,229 - Rru_A1238 0.43 -0.2
1,462,112 - Rru_A1239 0.14 -1.6
1,462,572 - Rru_A1239 0.55 -0.5
1,462,717 - Rru_A1239 0.68 -1.0
1,462,757 - Rru_A1239 0.71 -1.0

Or see this region's nucleotide sequence