Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1224

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1222 and Rru_A1223 are separated by 244 nucleotidesRru_A1223 and Rru_A1224 overlap by 1 nucleotidesRru_A1224 and Rru_A1225 are separated by 50 nucleotidesRru_A1225 and Rru_A1226 are separated by 28 nucleotides Rru_A1222: Rru_A1222 - Primosomal protein n (NCBI), at 1,441,961 to 1,444,396 _A1222 Rru_A1223: Rru_A1223 - H+-transporting two-sector ATPase, delta (OSCP) subunit (NCBI), at 1,444,641 to 1,445,201 _A1223 Rru_A1224: Rru_A1224 - ATP synthase F1, alpha subunit (NCBI), at 1,445,201 to 1,446,733 _A1224 Rru_A1225: Rru_A1225 - Sodium-transporting two-sector ATPase (NCBI), at 1,446,784 to 1,447,683 _A1225 Rru_A1226: Rru_A1226 - ATP synthase F1, beta subunit (NCBI), at 1,447,712 to 1,449,136 _A1226 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -2 -1 0 1at 1444.338 kb on + strandat 1444.621 kb on + strandat 1444.623 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,444,338 + -2.4
1,444,621 + -0.2
1,444,623 + -1.4

Or see this region's nucleotide sequence