Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1214

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkgd and Rru_A1214 are separated by 54 nucleotidesRru_A1214 and Rru_A1215 are separated by 115 nucleotides Rru_A1213: kgd - alpha-ketoglutarate decarboxylase (RefSeq), at 1,431,270 to 1,434,233 kgd Rru_A1214: Rru_A1214 - Dihydrolipoamide succinyltransferase (NCBI), at 1,434,288 to 1,435,583 _A1214 Rru_A1215: Rru_A1215 - Dihydrolipoamide dehydrogenase (NCBI), at 1,435,699 to 1,437,099 _A1215 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -2 -1 0 1at 1434.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,434,261 + -2.2

Or see this region's nucleotide sequence