Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1210

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1209 and Rru_A1210 are separated by 282 nucleotidesRru_A1210 and Rru_A1211 are separated by 47 nucleotides Rru_A1209: Rru_A1209 - Chromate transporter (NCBI), at 1,426,423 to 1,427,673 _A1209 Rru_A1210: Rru_A1210 - Malate dehydrogenase, NAD-dependent (NCBI), at 1,427,956 to 1,428,912 _A1210 Rru_A1211: Rru_A1211 - Succinyl-CoA synthetase, beta subunit (NCBI), at 1,428,960 to 1,430,159 _A1211 Position (kb) 1427 1428 1429Strain fitness (log2 ratio) -1 0 1at 1427.544 kb on - strand, within Rru_A1209at 1427.785 kb on + strandat 1427.905 kb on + strandat 1427.905 kb on + strandat 1427.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,427,544 - Rru_A1209 0.90 -1.0
1,427,785 + -0.7
1,427,905 + +0.3
1,427,905 + +0.3
1,427,938 + +0.3

Or see this region's nucleotide sequence