Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1205

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1204 and Rru_A1205 are separated by 28 nucleotidesRru_A1205 and Rru_A1206 are separated by 123 nucleotidesRru_A1206 and Rru_A1207 are separated by 240 nucleotides Rru_A1204: Rru_A1204 - Succinate dehydrogenase flavoprotein subunit (NCBI), at 1,420,795 to 1,422,579 _A1204 Rru_A1205: Rru_A1205 - Succinate dehydrogenase/fumarate reductase iron-sulfur protein (NCBI), at 1,422,608 to 1,423,390 _A1205 Rru_A1206: Rru_A1206 - hypothetical protein (NCBI), at 1,423,514 to 1,424,092 _A1206 Rru_A1207: Rru_A1207 - exopolyphosphatase-related protein (NCBI), at 1,424,333 to 1,425,262 _A1207 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1423.481 kb on + strandat 1423.481 kb on + strandat 1423.482 kb on - strandat 1423.515 kb on + strandat 1423.515 kb on + strandat 1423.949 kb on - strand, within Rru_A1206at 1424.141 kb on + strandat 1424.142 kb on - strandat 1424.142 kb on - strandat 1424.205 kb on + strandat 1424.205 kb on + strandat 1424.205 kb on + strandat 1424.205 kb on + strandat 1424.310 kb on - strandat 1424.329 kb on + strandat 1424.329 kb on + strandat 1424.329 kb on + strandat 1424.329 kb on + strandat 1424.330 kb on - strandat 1424.330 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,423,481 + +0.8
1,423,481 + +0.8
1,423,482 - -1.7
1,423,515 + -3.6
1,423,515 + +0.6
1,423,949 - Rru_A1206 0.75 +2.1
1,424,141 + +2.4
1,424,142 - +2.9
1,424,142 - +1.8
1,424,205 + -0.2
1,424,205 + +1.3
1,424,205 + -0.2
1,424,205 + +2.0
1,424,310 - -1.6
1,424,329 + -0.2
1,424,329 + -1.0
1,424,329 + +3.3
1,424,329 + -1.4
1,424,330 - -0.7
1,424,330 - -0.1

Or see this region's nucleotide sequence