Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1204

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1202 and Rru_A1203 are separated by 13 nucleotidesRru_A1203 and Rru_A1204 are separated by 5 nucleotidesRru_A1204 and Rru_A1205 are separated by 28 nucleotidesRru_A1205 and Rru_A1206 are separated by 123 nucleotides Rru_A1202: Rru_A1202 - Succinate dehydrogenase, cytochrome b subunit (NCBI), at 1,419,991 to 1,420,389 _A1202 Rru_A1203: Rru_A1203 - Succinate dehydrogenase, cytochrome b subunit (NCBI), at 1,420,403 to 1,420,789 _A1203 Rru_A1204: Rru_A1204 - Succinate dehydrogenase flavoprotein subunit (NCBI), at 1,420,795 to 1,422,579 _A1204 Rru_A1205: Rru_A1205 - Succinate dehydrogenase/fumarate reductase iron-sulfur protein (NCBI), at 1,422,608 to 1,423,390 _A1205 Rru_A1206: Rru_A1206 - hypothetical protein (NCBI), at 1,423,514 to 1,424,092 _A1206 Position (kb) 1420 1421 1422 1423Strain fitness (log2 ratio) -3 -2 -1 0 1at 1419.801 kb on + strandat 1419.801 kb on + strandat 1419.802 kb on - strandat 1419.802 kb on - strandat 1419.922 kb on + strandat 1419.922 kb on + strandat 1423.481 kb on + strandat 1423.481 kb on + strandat 1423.482 kb on - strandat 1423.515 kb on + strandat 1423.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,419,801 + -1.3
1,419,801 + +0.6
1,419,802 - +0.3
1,419,802 - +0.8
1,419,922 + -2.8
1,419,922 + -3.1
1,423,481 + +0.8
1,423,481 + +0.8
1,423,482 - -1.7
1,423,515 + -3.6
1,423,515 + +0.6

Or see this region's nucleotide sequence