Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1201 and Rru_A1202 are separated by 199 nucleotides Rru_A1202 and Rru_A1203 are separated by 13 nucleotides Rru_A1203 and Rru_A1204 are separated by 5 nucleotides
Rru_A1201: Rru_A1201 - MaoC-like dehydratase (NCBI), at 1,418,730 to 1,419,791
_A1201
Rru_A1202: Rru_A1202 - Succinate dehydrogenase, cytochrome b subunit (NCBI), at 1,419,991 to 1,420,389
_A1202
Rru_A1203: Rru_A1203 - Succinate dehydrogenase, cytochrome b subunit (NCBI), at 1,420,403 to 1,420,789
_A1203
Rru_A1204: Rru_A1204 - Succinate dehydrogenase flavoprotein subunit (NCBI), at 1,420,795 to 1,422,579
_A1204
Position (kb)
1420
1421 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1419.432 kb on + strand, within Rru_A1201 at 1419.432 kb on + strand, within Rru_A1201 at 1419.432 kb on + strand, within Rru_A1201 at 1419.432 kb on + strand, within Rru_A1201 at 1419.432 kb on + strand, within Rru_A1201 at 1419.433 kb on - strand, within Rru_A1201 at 1419.471 kb on + strand, within Rru_A1201 at 1419.471 kb on + strand, within Rru_A1201 at 1419.756 kb on + strand at 1419.801 kb on + strand at 1419.801 kb on + strand at 1419.802 kb on - strand at 1419.802 kb on - strand at 1419.922 kb on + strand at 1419.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,419,432 + Rru_A1201 0.66 -0.7 1,419,432 + Rru_A1201 0.66 -0.1 1,419,432 + Rru_A1201 0.66 +3.5 1,419,432 + Rru_A1201 0.66 -1.5 1,419,432 + Rru_A1201 0.66 +1.4 1,419,433 - Rru_A1201 0.66 -0.1 1,419,471 + Rru_A1201 0.70 +1.5 1,419,471 + Rru_A1201 0.70 -0.1 1,419,756 + +1.5 1,419,801 + -1.3 1,419,801 + +0.6 1,419,802 - +0.3 1,419,802 - +0.8 1,419,922 + -2.8 1,419,922 + -3.1
Or see this region's nucleotide sequence