Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1203

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1201 and Rru_A1202 are separated by 199 nucleotidesRru_A1202 and Rru_A1203 are separated by 13 nucleotidesRru_A1203 and Rru_A1204 are separated by 5 nucleotides Rru_A1201: Rru_A1201 - MaoC-like dehydratase (NCBI), at 1,418,730 to 1,419,791 _A1201 Rru_A1202: Rru_A1202 - Succinate dehydrogenase, cytochrome b subunit (NCBI), at 1,419,991 to 1,420,389 _A1202 Rru_A1203: Rru_A1203 - Succinate dehydrogenase, cytochrome b subunit (NCBI), at 1,420,403 to 1,420,789 _A1203 Rru_A1204: Rru_A1204 - Succinate dehydrogenase flavoprotein subunit (NCBI), at 1,420,795 to 1,422,579 _A1204 Position (kb) 1420 1421Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1419.432 kb on + strand, within Rru_A1201at 1419.432 kb on + strand, within Rru_A1201at 1419.432 kb on + strand, within Rru_A1201at 1419.432 kb on + strand, within Rru_A1201at 1419.432 kb on + strand, within Rru_A1201at 1419.433 kb on - strand, within Rru_A1201at 1419.471 kb on + strand, within Rru_A1201at 1419.471 kb on + strand, within Rru_A1201at 1419.756 kb on + strandat 1419.801 kb on + strandat 1419.801 kb on + strandat 1419.802 kb on - strandat 1419.802 kb on - strandat 1419.922 kb on + strandat 1419.922 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,419,432 + Rru_A1201 0.66 -0.7
1,419,432 + Rru_A1201 0.66 -0.1
1,419,432 + Rru_A1201 0.66 +3.5
1,419,432 + Rru_A1201 0.66 -1.5
1,419,432 + Rru_A1201 0.66 +1.4
1,419,433 - Rru_A1201 0.66 -0.1
1,419,471 + Rru_A1201 0.70 +1.5
1,419,471 + Rru_A1201 0.70 -0.1
1,419,756 + +1.5
1,419,801 + -1.3
1,419,801 + +0.6
1,419,802 - +0.3
1,419,802 - +0.8
1,419,922 + -2.8
1,419,922 + -3.1

Or see this region's nucleotide sequence