Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1196

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1195 and Rru_A1196 are separated by 87 nucleotidesRru_A1196 and Rru_A1197 are separated by 69 nucleotides Rru_A1195: Rru_A1195 - Cell wall hydrolase, SleB (NCBI), at 1,411,873 to 1,412,535 _A1195 Rru_A1196: Rru_A1196 - Aspartate-semialdehyde dehydrogenase, USG-1 related (NCBI), at 1,412,623 to 1,413,660 _A1196 Rru_A1197: Rru_A1197 - chemotaxis sensory transducer (NCBI), at 1,413,730 to 1,415,796 _A1197 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -1 0 1 2 3at 1411.645 kb on + strandat 1412.319 kb on + strand, within Rru_A1195at 1412.455 kb on - strand, within Rru_A1195at 1412.573 kb on + strandat 1412.618 kb on + strandat 1413.658 kb on + strandat 1413.659 kb on - strandat 1413.659 kb on - strandat 1413.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,411,645 + -0.5
1,412,319 + Rru_A1195 0.67 +1.8
1,412,455 - Rru_A1195 0.88 -1.2
1,412,573 + +1.8
1,412,618 + -1.2
1,413,658 + +0.3
1,413,659 - +3.1
1,413,659 - +0.4
1,413,731 + -0.4

Or see this region's nucleotide sequence