Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1195

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1194 and Rru_A1195 are separated by 734 nucleotidesRru_A1195 and Rru_A1196 are separated by 87 nucleotides Rru_A1194: Rru_A1194 - Protein of unknown function DUF134 (NCBI), at 1,410,707 to 1,411,138 _A1194 Rru_A1195: Rru_A1195 - Cell wall hydrolase, SleB (NCBI), at 1,411,873 to 1,412,535 _A1195 Rru_A1196: Rru_A1196 - Aspartate-semialdehyde dehydrogenase, USG-1 related (NCBI), at 1,412,623 to 1,413,660 _A1196 Position (kb) 1411 1412 1413Strain fitness (log2 ratio) -1 0 1 2at 1411.083 kb on + strand, within Rru_A1194at 1411.084 kb on - strand, within Rru_A1194at 1411.311 kb on + strandat 1411.311 kb on + strandat 1411.332 kb on - strandat 1411.389 kb on + strandat 1411.421 kb on + strandat 1411.422 kb on - strandat 1411.422 kb on - strandat 1411.520 kb on - strandat 1411.572 kb on + strandat 1411.645 kb on + strandat 1412.319 kb on + strand, within Rru_A1195at 1412.455 kb on - strand, within Rru_A1195at 1412.573 kb on + strandat 1412.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,411,083 + Rru_A1194 0.87 -0.1
1,411,084 - Rru_A1194 0.87 -0.5
1,411,311 + +0.4
1,411,311 + +0.4
1,411,332 - +2.0
1,411,389 + -0.6
1,411,421 + +1.0
1,411,422 - -1.3
1,411,422 - -1.1
1,411,520 - +0.2
1,411,572 + -1.6
1,411,645 + -0.5
1,412,319 + Rru_A1195 0.67 +1.8
1,412,455 - Rru_A1195 0.88 -1.2
1,412,573 + +1.8
1,412,618 + -1.2

Or see this region's nucleotide sequence