Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1187

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1185 and Rru_A1186 are separated by 121 nucleotidesRru_A1186 and Rru_A1187 overlap by 4 nucleotidesRru_A1187 and Rru_A1188 overlap by 4 nucleotidesRru_A1188 and Rru_A1189 are separated by 134 nucleotides Rru_A1185: Rru_A1185 - Ribosomal protein S16 (NCBI), at 1,403,752 to 1,404,126 _A1185 Rru_A1186: Rru_A1186 - 16S rRNA processing protein RimM (NCBI), at 1,404,248 to 1,404,853 _A1186 Rru_A1187: Rru_A1187 - tRNA (guanine-N(1)-)-methyltransferase (NCBI), at 1,404,850 to 1,405,569 _A1187 Rru_A1188: Rru_A1188 - Ribosomal protein L19 (NCBI), at 1,405,566 to 1,406,057 _A1188 Rru_A1189: Rru_A1189 - 3-isopropylmalate dehydratase large subunit region (NCBI), at 1,406,192 to 1,407,610 _A1189 Position (kb) 1404 1405 1406Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1405.525 kb on + strandat 1405.551 kb on + strandat 1406.174 kb on + strandat 1406.174 kb on + strandat 1406.174 kb on + strandat 1406.175 kb on - strandat 1406.175 kb on - strandat 1406.197 kb on + strandat 1406.273 kb on + strandat 1406.273 kb on + strandat 1406.274 kb on - strandat 1406.274 kb on - strandat 1406.274 kb on - strandat 1406.274 kb on - strandat 1406.386 kb on + strand, within Rru_A1189at 1406.386 kb on + strand, within Rru_A1189at 1406.387 kb on - strand, within Rru_A1189at 1406.486 kb on + strand, within Rru_A1189at 1406.525 kb on - strand, within Rru_A1189at 1406.548 kb on + strand, within Rru_A1189

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,405,525 + -1.7
1,405,551 + -1.2
1,406,174 + -0.7
1,406,174 + +1.8
1,406,174 + +1.8
1,406,175 - -3.1
1,406,175 - -1.4
1,406,197 + -2.3
1,406,273 + -2.5
1,406,273 + +0.3
1,406,274 - -3.5
1,406,274 - -3.4
1,406,274 - -3.1
1,406,274 - +2.1
1,406,386 + Rru_A1189 0.14 -2.2
1,406,386 + Rru_A1189 0.14 -5.0
1,406,387 - Rru_A1189 0.14 +0.8
1,406,486 + Rru_A1189 0.21 -4.6
1,406,525 - Rru_A1189 0.23 -1.3
1,406,548 + Rru_A1189 0.25 -1.0

Or see this region's nucleotide sequence