Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1186

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1184 and Rru_A1185 are separated by 78 nucleotidesRru_A1185 and Rru_A1186 are separated by 121 nucleotidesRru_A1186 and Rru_A1187 overlap by 4 nucleotidesRru_A1187 and Rru_A1188 overlap by 4 nucleotides Rru_A1184: Rru_A1184 - Signal recognition particle protein (NCBI), at 1,402,159 to 1,403,673 _A1184 Rru_A1185: Rru_A1185 - Ribosomal protein S16 (NCBI), at 1,403,752 to 1,404,126 _A1185 Rru_A1186: Rru_A1186 - 16S rRNA processing protein RimM (NCBI), at 1,404,248 to 1,404,853 _A1186 Rru_A1187: Rru_A1187 - tRNA (guanine-N(1)-)-methyltransferase (NCBI), at 1,404,850 to 1,405,569 _A1187 Rru_A1188: Rru_A1188 - Ribosomal protein L19 (NCBI), at 1,405,566 to 1,406,057 _A1188 Position (kb) 1404 1405Strain fitness (log2 ratio) -2 -1 0 1at 1403.707 kb on + strandat 1403.735 kb on + strandat 1405.525 kb on + strandat 1405.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,403,707 + -1.6
1,403,735 + -2.3
1,405,525 + -1.7
1,405,551 + -1.2

Or see this region's nucleotide sequence