Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1182

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1181 and Rru_A1182 overlap by 4 nucleotidesRru_A1182 and Rru_A1183 overlap by 4 nucleotides Rru_A1181: Rru_A1181 - Cell division transporter substrate-binding protein FtsY (NCBI), at 1,398,034 to 1,399,554 _A1181 Rru_A1182: Rru_A1182 - MiaB-like tRNA modifying enzyme (NCBI), at 1,399,551 to 1,400,876 _A1182 Rru_A1183: Rru_A1183 - Diaminopimelate epimerase (NCBI), at 1,400,873 to 1,401,715 _A1183 Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -2 -1 0 1 2at 1401.708 kb on - strandat 1401.708 kb on - strandat 1401.708 kb on - strandat 1401.727 kb on - strandat 1401.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,401,708 - +0.4
1,401,708 - +0.3
1,401,708 - -2.0
1,401,727 - +1.8
1,401,727 - +0.3

Or see this region's nucleotide sequence