Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1111 and Rru_A1112 are separated by 82 nucleotides Rru_A1112 and Rru_A1113 overlap by 11 nucleotides Rru_A1113 and Rru_A1114 are separated by 30 nucleotides
Rru_A1111: Rru_A1111 - Pseudouridine synthase, RluD (NCBI), at 1,306,656 to 1,307,687
_A1111
Rru_A1112: Rru_A1112 - hypothetical protein (NCBI), at 1,307,770 to 1,308,183
_A1112
Rru_A1113: Rru_A1113 - Mov34/MPN/PAD-1 (NCBI), at 1,308,173 to 1,308,628
_A1113
Rru_A1114: Rru_A1114 - Major facilitator superfamily MFS_1 (NCBI), at 1,308,659 to 1,310,119
_A1114
Position (kb) 1307
1308
1309 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 1306.779 kb on + strand, within Rru_A1111 at 1306.779 kb on + strand, within Rru_A1111 at 1306.780 kb on - strand, within Rru_A1111 at 1306.780 kb on - strand, within Rru_A1111 at 1306.780 kb on - strand, within Rru_A1111 at 1306.780 kb on - strand, within Rru_A1111 at 1306.847 kb on + strand, within Rru_A1111 at 1306.848 kb on - strand, within Rru_A1111 at 1306.848 kb on - strand, within Rru_A1111 at 1306.848 kb on - strand, within Rru_A1111 at 1306.895 kb on + strand, within Rru_A1111 at 1306.895 kb on + strand, within Rru_A1111 at 1306.895 kb on + strand, within Rru_A1111 at 1306.896 kb on - strand, within Rru_A1111 at 1306.896 kb on - strand, within Rru_A1111 at 1307.111 kb on - strand, within Rru_A1111 at 1307.111 kb on - strand, within Rru_A1111 at 1307.111 kb on - strand, within Rru_A1111 at 1307.198 kb on + strand, within Rru_A1111 at 1307.199 kb on - strand, within Rru_A1111 at 1307.199 kb on - strand, within Rru_A1111 at 1307.348 kb on + strand, within Rru_A1111 at 1307.371 kb on + strand, within Rru_A1111 at 1307.371 kb on + strand, within Rru_A1111 at 1307.371 kb on + strand, within Rru_A1111 at 1307.371 kb on + strand, within Rru_A1111 at 1307.372 kb on - strand, within Rru_A1111 at 1307.372 kb on - strand, within Rru_A1111 at 1307.372 kb on - strand, within Rru_A1111 at 1307.478 kb on + strand, within Rru_A1111 at 1307.478 kb on + strand, within Rru_A1111 at 1307.479 kb on - strand, within Rru_A1111 at 1307.479 kb on - strand, within Rru_A1111 at 1307.570 kb on + strand, within Rru_A1111 at 1307.570 kb on + strand, within Rru_A1111 at 1307.570 kb on + strand, within Rru_A1111 at 1307.571 kb on - strand, within Rru_A1111 at 1307.571 kb on - strand, within Rru_A1111 at 1307.571 kb on - strand, within Rru_A1111 at 1308.058 kb on + strand, within Rru_A1112 at 1308.729 kb on + strand at 1308.730 kb on - strand at 1308.874 kb on + strand, within Rru_A1114 at 1309.054 kb on - strand, within Rru_A1114 at 1309.054 kb on - strand, within Rru_A1114 at 1309.054 kb on - strand, within Rru_A1114 at 1309.054 kb on - strand, within Rru_A1114
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,306,779 + Rru_A1111 0.12 +8.5 1,306,779 + Rru_A1111 0.12 +9.6 1,306,780 - Rru_A1111 0.12 +9.3 1,306,780 - Rru_A1111 0.12 +9.9 1,306,780 - Rru_A1111 0.12 +9.7 1,306,780 - Rru_A1111 0.12 -0.1 1,306,847 + Rru_A1111 0.19 +8.9 1,306,848 - Rru_A1111 0.19 +9.9 1,306,848 - Rru_A1111 0.19 +10.3 1,306,848 - Rru_A1111 0.19 +9.1 1,306,895 + Rru_A1111 0.23 +8.7 1,306,895 + Rru_A1111 0.23 +9.0 1,306,895 + Rru_A1111 0.23 +8.7 1,306,896 - Rru_A1111 0.23 +9.5 1,306,896 - Rru_A1111 0.23 +9.0 1,307,111 - Rru_A1111 0.44 +10.0 1,307,111 - Rru_A1111 0.44 +9.9 1,307,111 - Rru_A1111 0.44 +9.1 1,307,198 + Rru_A1111 0.53 +8.7 1,307,199 - Rru_A1111 0.53 +9.9 1,307,199 - Rru_A1111 0.53 +0.1 1,307,348 + Rru_A1111 0.67 +8.7 1,307,371 + Rru_A1111 0.69 +9.1 1,307,371 + Rru_A1111 0.69 +7.9 1,307,371 + Rru_A1111 0.69 +9.1 1,307,371 + Rru_A1111 0.69 +7.8 1,307,372 - Rru_A1111 0.69 +8.6 1,307,372 - Rru_A1111 0.69 +8.9 1,307,372 - Rru_A1111 0.69 +9.3 1,307,478 + Rru_A1111 0.80 +7.5 1,307,478 + Rru_A1111 0.80 +8.4 1,307,479 - Rru_A1111 0.80 +9.0 1,307,479 - Rru_A1111 0.80 +9.2 1,307,570 + Rru_A1111 0.89 +1.2 1,307,570 + Rru_A1111 0.89 +8.9 1,307,570 + Rru_A1111 0.89 +8.6 1,307,571 - Rru_A1111 0.89 +8.9 1,307,571 - Rru_A1111 0.89 +8.7 1,307,571 - Rru_A1111 0.89 +8.6 1,308,058 + Rru_A1112 0.70 -2.7 1,308,729 + -2.0 1,308,730 - +0.4 1,308,874 + Rru_A1114 0.15 -0.2 1,309,054 - Rru_A1114 0.27 +0.2 1,309,054 - Rru_A1114 0.27 -1.9 1,309,054 - Rru_A1114 0.27 +1.8 1,309,054 - Rru_A1114 0.27 -2.0
Or see this region's nucleotide sequence