Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1108

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1107 and Rru_A1108 are separated by 0 nucleotidesRru_A1108 and Rru_A1109 are separated by 313 nucleotides Rru_A1107: Rru_A1107 - hypothetical protein (NCBI), at 1,300,534 to 1,302,567 _A1107 Rru_A1108: Rru_A1108 - hypothetical protein (NCBI), at 1,302,568 to 1,303,155 _A1108 Rru_A1109: Rru_A1109 - chemotaxis sensory transducer (NCBI), at 1,303,469 to 1,305,169 _A1109 Position (kb) 1302 1303 1304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1301.646 kb on + strand, within Rru_A1107at 1301.719 kb on - strand, within Rru_A1107at 1301.779 kb on + strand, within Rru_A1107at 1301.780 kb on - strand, within Rru_A1107at 1301.781 kb on + strand, within Rru_A1107at 1301.782 kb on - strand, within Rru_A1107at 1301.782 kb on - strand, within Rru_A1107at 1301.887 kb on + strand, within Rru_A1107at 1301.888 kb on - strand, within Rru_A1107at 1301.888 kb on - strand, within Rru_A1107at 1301.888 kb on - strand, within Rru_A1107at 1301.932 kb on + strand, within Rru_A1107at 1302.265 kb on + strand, within Rru_A1107at 1302.265 kb on + strand, within Rru_A1107at 1302.266 kb on - strand, within Rru_A1107at 1302.266 kb on - strand, within Rru_A1107at 1302.266 kb on - strand, within Rru_A1107at 1302.266 kb on - strand, within Rru_A1107at 1302.343 kb on + strand, within Rru_A1107at 1302.343 kb on + strand, within Rru_A1107at 1302.344 kb on - strand, within Rru_A1107at 1302.344 kb on - strand, within Rru_A1107at 1302.412 kb on + strandat 1302.412 kb on + strandat 1302.413 kb on - strandat 1302.566 kb on - strandat 1302.566 kb on - strandat 1302.654 kb on + strand, within Rru_A1108at 1302.654 kb on + strand, within Rru_A1108at 1302.655 kb on - strand, within Rru_A1108at 1302.720 kb on + strand, within Rru_A1108at 1302.721 kb on - strand, within Rru_A1108at 1302.907 kb on + strand, within Rru_A1108at 1302.907 kb on + strand, within Rru_A1108at 1302.907 kb on + strand, within Rru_A1108at 1302.908 kb on - strand, within Rru_A1108at 1302.908 kb on - strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.938 kb on - strand, within Rru_A1108at 1302.938 kb on - strand, within Rru_A1108at 1302.939 kb on + strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1303.309 kb on + strandat 1303.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,301,646 + Rru_A1107 0.55 -1.2
1,301,719 - Rru_A1107 0.58 -0.6
1,301,779 + Rru_A1107 0.61 +0.6
1,301,780 - Rru_A1107 0.61 -1.3
1,301,781 + Rru_A1107 0.61 +0.6
1,301,782 - Rru_A1107 0.61 -0.9
1,301,782 - Rru_A1107 0.61 +0.8
1,301,887 + Rru_A1107 0.67 -3.9
1,301,888 - Rru_A1107 0.67 -0.2
1,301,888 - Rru_A1107 0.67 -1.3
1,301,888 - Rru_A1107 0.67 +0.3
1,301,932 + Rru_A1107 0.69 -1.2
1,302,265 + Rru_A1107 0.85 -1.2
1,302,265 + Rru_A1107 0.85 -1.9
1,302,266 - Rru_A1107 0.85 -2.1
1,302,266 - Rru_A1107 0.85 +1.5
1,302,266 - Rru_A1107 0.85 -1.0
1,302,266 - Rru_A1107 0.85 +3.0
1,302,343 + Rru_A1107 0.89 -3.0
1,302,343 + Rru_A1107 0.89 -0.6
1,302,344 - Rru_A1107 0.89 +0.2
1,302,344 - Rru_A1107 0.89 -0.1
1,302,412 + -0.2
1,302,412 + -2.4
1,302,413 - +0.6
1,302,566 - -1.4
1,302,566 - -1.5
1,302,654 + Rru_A1108 0.15 +0.4
1,302,654 + Rru_A1108 0.15 -2.3
1,302,655 - Rru_A1108 0.15 -1.0
1,302,720 + Rru_A1108 0.26 -3.3
1,302,721 - Rru_A1108 0.26 +1.8
1,302,907 + Rru_A1108 0.58 -0.1
1,302,907 + Rru_A1108 0.58 +1.1
1,302,907 + Rru_A1108 0.58 +0.2
1,302,908 - Rru_A1108 0.58 -3.3
1,302,908 - Rru_A1108 0.58 -0.5
1,302,937 + Rru_A1108 0.63 -2.9
1,302,937 + Rru_A1108 0.63 -3.0
1,302,937 + Rru_A1108 0.63 -3.2
1,302,937 + Rru_A1108 0.63 -0.5
1,302,937 + Rru_A1108 0.63 -1.4
1,302,937 + Rru_A1108 0.63 -1.2
1,302,937 + Rru_A1108 0.63 -0.9
1,302,937 + Rru_A1108 0.63 -2.4
1,302,938 - Rru_A1108 0.63 +1.4
1,302,938 - Rru_A1108 0.63 +0.8
1,302,939 + Rru_A1108 0.63 +0.2
1,302,940 - Rru_A1108 0.63 +0.9
1,302,940 - Rru_A1108 0.63 -2.0
1,302,940 - Rru_A1108 0.63 +0.5
1,302,940 - Rru_A1108 0.63 -0.2
1,303,309 + +0.3
1,303,439 + +0.8

Or see this region's nucleotide sequence