Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1102

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1101 and Rru_A1102 are separated by 248 nucleotidesRru_A1102 and Rru_A1103 overlap by 4 nucleotides Rru_A1101: Rru_A1101 - hypothetical protein (NCBI), at 1,292,422 to 1,294,488 _A1101 Rru_A1102: Rru_A1102 - Phosphomethylpyrimidine kinase (NCBI), at 1,294,737 to 1,295,552 _A1102 Rru_A1103: Rru_A1103 - Phenazine biosynthesis PhzC/PhzF protein (NCBI), at 1,295,549 to 1,296,382 _A1103 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1293.800 kb on + strand, within Rru_A1101at 1294.349 kb on + strandat 1294.586 kb on + strandat 1294.586 kb on + strandat 1294.586 kb on + strandat 1294.587 kb on - strandat 1294.587 kb on - strandat 1294.613 kb on + strandat 1294.613 kb on + strandat 1294.614 kb on - strandat 1294.614 kb on - strandat 1294.614 kb on - strandat 1294.614 kb on - strandat 1294.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,293,800 + Rru_A1101 0.67 -2.0
1,294,349 + +1.8
1,294,586 + -1.5
1,294,586 + -1.7
1,294,586 + -1.0
1,294,587 - -0.8
1,294,587 - +0.1
1,294,613 + -0.8
1,294,613 + -2.8
1,294,614 - +0.5
1,294,614 - -1.4
1,294,614 - +1.1
1,294,614 - -0.7
1,294,686 - +1.0

Or see this region's nucleotide sequence