Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1099

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1098 and Rru_A1099 are separated by 4 nucleotidesRru_A1099 and Rru_A1100 are separated by 152 nucleotides Rru_A1098: Rru_A1098 - Peptidase M41, FtsH (NCBI), at 1,287,740 to 1,289,662 _A1098 Rru_A1099: Rru_A1099 - Dihydropteroate synthase (NCBI), at 1,289,667 to 1,290,857 _A1099 Rru_A1100: Rru_A1100 - Phosphoglucosamine mutase (NCBI), at 1,291,010 to 1,292,368 _A1100 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -2 -1 0 1at 1290.855 kb on + strandat 1290.855 kb on + strandat 1290.902 kb on + strandat 1290.902 kb on + strandat 1290.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,290,855 + +0.1
1,290,855 + -0.9
1,290,902 + -1.2
1,290,902 + -1.8
1,290,906 - -0.5

Or see this region's nucleotide sequence