Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1098

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1097 and Rru_A1098 are separated by 139 nucleotidesRru_A1098 and Rru_A1099 are separated by 4 nucleotides Rru_A1097: Rru_A1097 - PP-loop protein (NCBI), at 1,286,212 to 1,287,600 _A1097 Rru_A1098: Rru_A1098 - Peptidase M41, FtsH (NCBI), at 1,287,740 to 1,289,662 _A1098 Rru_A1099: Rru_A1099 - Dihydropteroate synthase (NCBI), at 1,289,667 to 1,290,857 _A1099 Position (kb) 1287 1288 1289 1290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1287.598 kb on + strandat 1287.598 kb on + strandat 1287.598 kb on + strandat 1287.598 kb on + strandat 1287.599 kb on - strandat 1287.649 kb on + strandat 1287.649 kb on + strandat 1287.649 kb on + strandat 1287.649 kb on + strandat 1287.649 kb on + strandat 1287.649 kb on + strandat 1287.649 kb on + strandat 1287.649 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,287,598 + +1.8
1,287,598 + +4.3
1,287,598 + -1.2
1,287,598 + +0.1
1,287,599 - -4.2
1,287,649 + -0.2
1,287,649 + -0.2
1,287,649 + -1.4
1,287,649 + -3.8
1,287,649 + +2.5
1,287,649 + +0.6
1,287,649 + +2.4
1,287,649 + +2.9

Or see this region's nucleotide sequence