Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1094

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1093 and Rru_A1094 are separated by 345 nucleotidesRru_A1094 and Rru_A1095 are separated by 152 nucleotides Rru_A1093: Rru_A1093 - hypothetical protein (NCBI), at 1,281,601 to 1,282,626 _A1093 Rru_A1094: Rru_A1094 - TolB protein (NCBI), at 1,282,972 to 1,284,303 _A1094 Rru_A1095: Rru_A1095 - OmpA/MotB (NCBI), at 1,284,456 to 1,284,941 _A1095 Position (kb) 1282 1283 1284 1285Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1282.718 kb on + strandat 1282.726 kb on - strandat 1282.726 kb on - strandat 1282.771 kb on + strandat 1284.306 kb on + strandat 1284.361 kb on + strandat 1284.361 kb on + strandat 1284.363 kb on + strandat 1284.437 kb on + strandat 1284.437 kb on + strandat 1285.138 kb on + strandat 1285.138 kb on + strandat 1285.138 kb on + strandat 1285.138 kb on + strandat 1285.160 kb on + strandat 1285.192 kb on + strandat 1285.198 kb on + strandat 1285.198 kb on + strandat 1285.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,282,718 + -2.0
1,282,726 - -1.6
1,282,726 - -1.9
1,282,771 + -3.9
1,284,306 + -0.8
1,284,361 + -1.4
1,284,361 + -1.2
1,284,363 + -2.8
1,284,437 + -1.3
1,284,437 + +0.2
1,285,138 + -1.4
1,285,138 + -0.5
1,285,138 + +0.8
1,285,138 + -1.3
1,285,160 + -0.1
1,285,192 + +1.1
1,285,198 + +1.8
1,285,198 + -1.2
1,285,233 + -2.4

Or see this region's nucleotide sequence