Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1093

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1091 and Rru_A1092 are separated by 27 nucleotidesRru_A1092 and Rru_A1093 are separated by 16 nucleotidesRru_A1093 and Rru_A1094 are separated by 345 nucleotides Rru_A1091: Rru_A1091 - MotA/TolQ/ExbB proton channel (NCBI), at 1,280,130 to 1,281,056 _A1091 Rru_A1092: Rru_A1092 - Biopolymer transport protein ExbD/TolR (NCBI), at 1,281,084 to 1,281,584 _A1092 Rru_A1093: Rru_A1093 - hypothetical protein (NCBI), at 1,281,601 to 1,282,626 _A1093 Rru_A1094: Rru_A1094 - TolB protein (NCBI), at 1,282,972 to 1,284,303 _A1094 Position (kb) 1281 1282 1283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1281.582 kb on + strandat 1281.582 kb on + strandat 1282.718 kb on + strandat 1282.726 kb on - strandat 1282.726 kb on - strandat 1282.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,281,582 + -0.2
1,281,582 + +1.3
1,282,718 + -2.0
1,282,726 - -1.6
1,282,726 - -1.9
1,282,771 + -3.9

Or see this region's nucleotide sequence