Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1092

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1090 and Rru_A1091 are separated by 22 nucleotidesRru_A1091 and Rru_A1092 are separated by 27 nucleotidesRru_A1092 and Rru_A1093 are separated by 16 nucleotides Rru_A1090: Rru_A1090 - 4-hydroxybenzoyl-CoA thioesterase (NCBI), at 1,279,658 to 1,280,107 _A1090 Rru_A1091: Rru_A1091 - MotA/TolQ/ExbB proton channel (NCBI), at 1,280,130 to 1,281,056 _A1091 Rru_A1092: Rru_A1092 - Biopolymer transport protein ExbD/TolR (NCBI), at 1,281,084 to 1,281,584 _A1092 Rru_A1093: Rru_A1093 - hypothetical protein (NCBI), at 1,281,601 to 1,282,626 _A1093 Position (kb) 1281 1282Strain fitness (log2 ratio) -1 0 1 2at 1280.088 kb on + strandat 1280.088 kb on + strandat 1281.582 kb on + strandat 1281.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,280,088 + +1.8
1,280,088 + -0.6
1,281,582 + -0.2
1,281,582 + +1.3

Or see this region's nucleotide sequence