Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1089

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1087 and Rru_A1088 overlap by 4 nucleotidesRru_A1088 and Rru_A1089 are separated by 3 nucleotidesRru_A1089 and Rru_A1090 overlap by 4 nucleotidesRru_A1090 and Rru_A1091 are separated by 22 nucleotides Rru_A1087: Rru_A1087 - Crossover junction endodeoxyribonuclease RuvC (NCBI), at 1,277,461 to 1,277,970 _A1087 Rru_A1088: Rru_A1088 - DNA recombination protein RuvA (NCBI), at 1,277,967 to 1,278,605 _A1088 Rru_A1089: Rru_A1089 - Holliday junction DNA helicase RuvB (NCBI), at 1,278,609 to 1,279,661 _A1089 Rru_A1090: Rru_A1090 - 4-hydroxybenzoyl-CoA thioesterase (NCBI), at 1,279,658 to 1,280,107 _A1090 Rru_A1091: Rru_A1091 - MotA/TolQ/ExbB proton channel (NCBI), at 1,280,130 to 1,281,056 _A1091 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -1 0 1 2at 1278.603 kb on + strandat 1278.603 kb on + strandat 1279.889 kb on + strand, within Rru_A1090at 1279.978 kb on + strand, within Rru_A1090at 1280.088 kb on + strandat 1280.088 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,278,603 + -0.8
1,278,603 + +0.6
1,279,889 + Rru_A1090 0.51 -0.6
1,279,978 + Rru_A1090 0.71 +1.8
1,280,088 + +1.8
1,280,088 + -0.6

Or see this region's nucleotide sequence