Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1088

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1086 and Rru_A1087 overlap by 4 nucleotidesRru_A1087 and Rru_A1088 overlap by 4 nucleotidesRru_A1088 and Rru_A1089 are separated by 3 nucleotides Rru_A1086: Rru_A1086 - hypothetical protein (RefSeq), at 1,276,715 to 1,277,464 _A1086 Rru_A1087: Rru_A1087 - Crossover junction endodeoxyribonuclease RuvC (NCBI), at 1,277,461 to 1,277,970 _A1087 Rru_A1088: Rru_A1088 - DNA recombination protein RuvA (NCBI), at 1,277,967 to 1,278,605 _A1088 Rru_A1089: Rru_A1089 - Holliday junction DNA helicase RuvB (NCBI), at 1,278,609 to 1,279,661 _A1089 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1276.973 kb on + strand, within Rru_A1086at 1276.982 kb on + strand, within Rru_A1086at 1277.423 kb on + strandat 1277.423 kb on + strandat 1278.603 kb on + strandat 1278.603 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,276,973 + Rru_A1086 0.34 -4.1
1,276,982 + Rru_A1086 0.36 -1.0
1,277,423 + -0.8
1,277,423 + +1.1
1,278,603 + -0.8
1,278,603 + +0.6

Or see this region's nucleotide sequence