Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1071 and Rru_A1072 are separated by 340 nucleotides Rru_A1072 and Rru_A1073 are separated by 110 nucleotides Rru_A1073 and Rru_A1074 are separated by 15 nucleotides
Rru_A1071: Rru_A1071 - Adenylate/Guanylate Cyclase (NCBI), at 1,260,786 to 1,262,828
_A1071
Rru_A1072: Rru_A1072 - Ribosomal protein L31 (NCBI), at 1,263,169 to 1,263,387
_A1072
Rru_A1073: Rru_A1073 - OmpA/MotB (NCBI), at 1,263,498 to 1,264,625
_A1073
Rru_A1074: Rru_A1074 - MotA/TolQ/ExbB proton channel family protein (NCBI), at 1,264,641 to 1,265,969
_A1074
Position (kb)
1263
1264
1265 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1262.629 kb on + strand at 1262.629 kb on + strand at 1262.629 kb on + strand at 1262.629 kb on + strand at 1262.629 kb on + strand at 1262.629 kb on + strand at 1262.629 kb on + strand at 1262.630 kb on - strand at 1262.630 kb on - strand at 1262.699 kb on + strand at 1262.699 kb on + strand at 1262.699 kb on + strand at 1262.700 kb on - strand at 1262.700 kb on - strand at 1262.759 kb on - strand at 1262.801 kb on - strand at 1262.801 kb on - strand at 1262.810 kb on - strand at 1262.819 kb on + strand at 1262.899 kb on + strand at 1262.899 kb on + strand at 1262.899 kb on + strand at 1262.900 kb on - strand at 1262.900 kb on - strand at 1262.900 kb on - strand at 1262.900 kb on - strand at 1262.900 kb on - strand at 1263.170 kb on + strand at 1263.170 kb on + strand at 1263.420 kb on - strand at 1264.804 kb on + strand, within Rru_A1074 at 1264.805 kb on - strand, within Rru_A1074 at 1265.203 kb on + strand, within Rru_A1074 at 1265.204 kb on - strand, within Rru_A1074
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 1,262,629 + +1.0 1,262,629 + -1.2 1,262,629 + -1.1 1,262,629 + +1.7 1,262,629 + +2.2 1,262,629 + -0.7 1,262,629 + -0.2 1,262,630 - -2.5 1,262,630 - -0.4 1,262,699 + -1.6 1,262,699 + -0.7 1,262,699 + +1.8 1,262,700 - -1.2 1,262,700 - -0.4 1,262,759 - -2.6 1,262,801 - -1.3 1,262,801 - +1.8 1,262,810 - -1.0 1,262,819 + +0.3 1,262,899 + +1.8 1,262,899 + -0.7 1,262,899 + +0.1 1,262,900 - -2.1 1,262,900 - +0.1 1,262,900 - -3.5 1,262,900 - -0.6 1,262,900 - +0.6 1,263,170 + +2.8 1,263,170 + +3.5 1,263,420 - -0.5 1,264,804 + Rru_A1074 0.12 -1.5 1,264,805 - Rru_A1074 0.12 +4.3 1,265,203 + Rru_A1074 0.42 +1.8 1,265,204 - Rru_A1074 0.42 +1.8
Or see this region's nucleotide sequence