Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1072

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1071 and Rru_A1072 are separated by 340 nucleotidesRru_A1072 and Rru_A1073 are separated by 110 nucleotides Rru_A1071: Rru_A1071 - Adenylate/Guanylate Cyclase (NCBI), at 1,260,786 to 1,262,828 _A1071 Rru_A1072: Rru_A1072 - Ribosomal protein L31 (NCBI), at 1,263,169 to 1,263,387 _A1072 Rru_A1073: Rru_A1073 - OmpA/MotB (NCBI), at 1,263,498 to 1,264,625 _A1073 Position (kb) 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1262.354 kb on + strand, within Rru_A1071at 1262.354 kb on + strand, within Rru_A1071at 1262.355 kb on - strand, within Rru_A1071at 1262.629 kb on + strandat 1262.629 kb on + strandat 1262.629 kb on + strandat 1262.629 kb on + strandat 1262.629 kb on + strandat 1262.629 kb on + strandat 1262.629 kb on + strandat 1262.630 kb on - strandat 1262.630 kb on - strandat 1262.699 kb on + strandat 1262.699 kb on + strandat 1262.699 kb on + strandat 1262.700 kb on - strandat 1262.700 kb on - strandat 1262.759 kb on - strandat 1262.801 kb on - strandat 1262.801 kb on - strandat 1262.810 kb on - strandat 1262.819 kb on + strandat 1262.899 kb on + strandat 1262.899 kb on + strandat 1262.899 kb on + strandat 1262.900 kb on - strandat 1262.900 kb on - strandat 1262.900 kb on - strandat 1262.900 kb on - strandat 1262.900 kb on - strandat 1263.170 kb on + strandat 1263.170 kb on + strandat 1263.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,262,354 + Rru_A1071 0.77 +2.0
1,262,354 + Rru_A1071 0.77 -0.5
1,262,355 - Rru_A1071 0.77 +2.4
1,262,629 + +1.0
1,262,629 + -1.2
1,262,629 + -1.1
1,262,629 + +1.7
1,262,629 + +2.2
1,262,629 + -0.7
1,262,629 + -0.2
1,262,630 - -2.5
1,262,630 - -0.4
1,262,699 + -1.6
1,262,699 + -0.7
1,262,699 + +1.8
1,262,700 - -1.2
1,262,700 - -0.4
1,262,759 - -2.6
1,262,801 - -1.3
1,262,801 - +1.8
1,262,810 - -1.0
1,262,819 + +0.3
1,262,899 + +1.8
1,262,899 + -0.7
1,262,899 + +0.1
1,262,900 - -2.1
1,262,900 - +0.1
1,262,900 - -3.5
1,262,900 - -0.6
1,262,900 - +0.6
1,263,170 + +2.8
1,263,170 + +3.5
1,263,420 - -0.5

Or see this region's nucleotide sequence