Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0953

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0952 and Rru_A0953 are separated by 10 nucleotidesRru_A0953 and Rru_A0954 are separated by 33 nucleotides Rru_A0952: Rru_A0952 - UDP-N-acetylmuramoylalanine-D-glutamate ligase (NCBI), at 1,135,925 to 1,137,358 _A0952 Rru_A0953: Rru_A0953 - Phospho-N-acetylmuramoyl-pentapeptidetransferase (NCBI), at 1,137,369 to 1,138,451 _A0953 Rru_A0954: Rru_A0954 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (NCBI), at 1,138,485 to 1,139,951 _A0954 Position (kb) 1137 1138 1139Strain fitness (log2 ratio) -1 0 1at 1138.483 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,138,483 - -0.3

Or see this region's nucleotide sequence