Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0945

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0944 and Rru_A0945 are separated by 144 nucleotidesRru_A0945 and Rru_A0946 overlap by 8 nucleotidesRru_A0946 and Rru_A0947 overlap by 13 nucleotides Rru_A0944: Rru_A0944 - Cell division protein FtsZ (NCBI), at 1,125,844 to 1,127,841 _A0944 Rru_A0945: Rru_A0945 - Cell division protein FtsA (NCBI), at 1,127,986 to 1,129,308 _A0945 Rru_A0946: Rru_A0946 - Cell division protein FtsQ (NCBI), at 1,129,301 to 1,130,296 _A0946 Rru_A0947: Rru_A0947 - D-alanine--D-alanine ligase (NCBI), at 1,130,284 to 1,131,192 _A0947 Position (kb) 1127 1128 1129 1130Strain fitness (log2 ratio) -1 0 1at 1129.332 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
1,129,332 - +1.7

Or see this region's nucleotide sequence