Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0943

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0941 and Rru_A0942 are separated by 347 nucleotidesRru_A0942 and Rru_A0943 are separated by 107 nucleotidesRru_A0943 and Rru_A0944 are separated by 505 nucleotides Rru_A0941: Rru_A0941 - competence lipoprotein ComL, putative (NCBI), at 1,122,551 to 1,123,429 _A0941 Rru_A0942: Rru_A0942 - GreA/GreB family elongation factor (NCBI), at 1,123,777 to 1,124,187 _A0942 Rru_A0943: Rru_A0943 - UDP-3-0-acyl N-acetylglucosamine deacetylase (NCBI), at 1,124,295 to 1,125,338 _A0943 Rru_A0944: Rru_A0944 - Cell division protein FtsZ (NCBI), at 1,125,844 to 1,127,841 _A0944 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.733 kb on + strandat 1123.773 kb on - strandat 1125.526 kb on + strandat 1125.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,123,517 - -0.2
1,123,517 - -2.9
1,123,517 - -0.5
1,123,733 + +7.8
1,123,773 - -1.4
1,125,526 + -2.6
1,125,705 - -0.2

Or see this region's nucleotide sequence