Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0940

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0939 and Rru_A0940 are separated by 42 nucleotidesRru_A0940 and Rru_A0941 are separated by 13 nucleotides Rru_A0939: Rru_A0939 - DNA ligase (NAD+) (NCBI), at 1,118,665 to 1,120,761 _A0939 Rru_A0940: Rru_A0940 - DNA repair protein RecN (NCBI), at 1,120,804 to 1,122,537 _A0940 Rru_A0941: Rru_A0941 - competence lipoprotein ComL, putative (NCBI), at 1,122,551 to 1,123,429 _A0941 Position (kb) 1120 1121 1122 1123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1121.451 kb on - strand, within Rru_A0940at 1121.643 kb on + strand, within Rru_A0940at 1121.644 kb on - strand, within Rru_A0940at 1122.216 kb on - strand, within Rru_A0940at 1122.216 kb on - strand, within Rru_A0940at 1122.377 kb on - strandat 1123.517 kb on - strandat 1123.517 kb on - strandat 1123.517 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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1,121,451 - Rru_A0940 0.37 +0.8
1,121,643 + Rru_A0940 0.48 +0.5
1,121,644 - Rru_A0940 0.48 -1.4
1,122,216 - Rru_A0940 0.81 +2.5
1,122,216 - Rru_A0940 0.81 +0.8
1,122,377 - -1.2
1,123,517 - -0.2
1,123,517 - -2.9
1,123,517 - -0.5

Or see this region's nucleotide sequence