Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0934

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source anaerobic Succinic Acid 31.25 mM
1,111,310	-		Rru_A0933	0.13	+1.6
1,111,410	-		Rru_A0933	0.22	+0.4
1,111,485	+		Rru_A0933	0.29	-0.3
1,111,485	+		Rru_A0933	0.29	-0.3
1,111,485	+		Rru_A0933	0.29	-0.8
1,111,485	+		Rru_A0933	0.29	+0.2
1,111,485	+		Rru_A0933	0.29	+0.2
1,111,486	-		Rru_A0933	0.29	-0.7
1,111,486	-		Rru_A0933	0.29	+0.7
1,111,486	-		Rru_A0933	0.29	-0.5
1,111,486	-		Rru_A0933	0.29	-0.4
1,111,486	-		Rru_A0933	0.29	+0.4
1,111,581	+		Rru_A0933	0.37	+1.7
1,111,582	-		Rru_A0933	0.37	+2.8
1,111,821	+		Rru_A0933	0.58	+0.7
1,111,821	+		Rru_A0933	0.58	+0.1
1,111,822	-		Rru_A0933	0.58	+0.6
1,111,839	+		Rru_A0933	0.60	+0.2
1,111,839	+		Rru_A0933	0.60	+0.2
1,111,840	-		Rru_A0933	0.60	-2.3
1,111,840	-		Rru_A0933	0.60	+2.1
1,111,862	+		Rru_A0933	0.62	+0.5
1,111,862	+		Rru_A0933	0.62	+0.3
1,111,862	+		Rru_A0933	0.62	-2.2
1,111,863	-		Rru_A0933	0.62	+1.2
1,111,960	-		Rru_A0933	0.71	-1.9
1,112,028	+		Rru_A0933	0.77	-3.6
1,112,028	+		Rru_A0933	0.77	-1.9
1,112,037	+		Rru_A0933	0.77	+1.7
1,112,037	+		Rru_A0933	0.77	+0.9
1,112,037	+		Rru_A0933	0.77	-2.3
1,112,037	+		Rru_A0933	0.77	+1.5
1,112,037	+		Rru_A0933	0.77	-1.3
1,112,037	+		Rru_A0933	0.77	-0.9
1,112,038	-		Rru_A0933	0.78	+0.6
1,112,038	-		Rru_A0933	0.78	+1.8
1,112,038	-		Rru_A0933	0.78	+3.3
1,112,038	-		Rru_A0933	0.78	+2.2
1,112,038	-		Rru_A0933	0.78	-2.8
1,112,038	-		Rru_A0933	0.78	+0.7
1,112,142	+		Rru_A0933	0.87	+1.8
1,112,142	+		Rru_A0933	0.87	+0.1
1,112,143	-		Rru_A0933	0.87	+0.8
1,112,217	+				-0.5
1,112,320	-				+3.3
1,112,324	+				+0.4
1,112,324	+				-1.5
1,112,324	+				-0.5
1,112,324	+				+0.6
1,112,324	+				+1.6
1,112,329	-				-0.8
1,112,329	-				-0.3
1,112,329	-				-1.3
1,112,343	+				+0.2
1,112,344	-				+2.2
1,112,409	-				+0.2
1,112,482	+		Rru_A0934	0.10	+0.3
1,112,610	-		Rru_A0934	0.18	+1.4
1,112,615	+		Rru_A0934	0.18	-1.8
1,112,643	+		Rru_A0934	0.20	+1.2
1,112,739	+		Rru_A0934	0.25	-2.9
1,112,740	-		Rru_A0934	0.25	+0.5
1,112,740	-		Rru_A0934	0.25	-0.6
1,112,740	-		Rru_A0934	0.25	-0.7
1,112,740	-		Rru_A0934	0.25	+0.6
1,112,835	+		Rru_A0934	0.31	+0.1
1,112,835	+		Rru_A0934	0.31	-1.8
1,112,836	-		Rru_A0934	0.31	+0.5
1,112,836	-		Rru_A0934	0.31	+0.5
1,112,874	+		Rru_A0934	0.33	-1.8
1,112,874	+		Rru_A0934	0.33	-2.6
1,112,875	-		Rru_A0934	0.33	-1.6
1,112,875	-		Rru_A0934	0.33	-1.2
1,112,875	-		Rru_A0934	0.33	+0.8
1,112,899	-		Rru_A0934	0.35	+1.2
1,112,952	-		Rru_A0934	0.38	-0.7
1,113,024	+		Rru_A0934	0.42	+1.0
1,113,025	-		Rru_A0934	0.42	+0.7
1,113,117	+		Rru_A0934	0.47	-2.0
1,113,117	+		Rru_A0934	0.47	+0.8
1,113,117	+		Rru_A0934	0.47	-1.4
1,113,118	-		Rru_A0934	0.47	+4.8
1,113,126	+		Rru_A0934	0.48	+0.5
1,113,127	-		Rru_A0934	0.48	-0.5
1,113,127	-		Rru_A0934	0.48	-0.9
1,113,127	-		Rru_A0934	0.48	-1.6
1,113,127	-		Rru_A0934	0.48	+1.1
1,113,128	+		Rru_A0934	0.48	+0.0
1,113,128	+		Rru_A0934	0.48	+0.3
1,113,128	+		Rru_A0934	0.48	+0.9
1,113,128	+		Rru_A0934	0.48	+0.2
1,113,129	-		Rru_A0934	0.48	+0.6
1,113,570	+		Rru_A0934	0.74	-0.1
1,113,570	+		Rru_A0934	0.74	-2.6
1,113,571	-		Rru_A0934	0.74	+0.1
1,113,571	-		Rru_A0934	0.74	-1.3
1,113,571	-		Rru_A0934	0.74	-2.7
1,113,571	-		Rru_A0934	0.74	-0.5
1,113,571	-		Rru_A0934	0.74	+1.1
1,113,572	+		Rru_A0934	0.74	+0.2
1,113,572	+		Rru_A0934	0.74	+0.9
1,113,573	-		Rru_A0934	0.74	+1.6
1,113,669	+		Rru_A0934	0.79	-1.7
1,113,669	+		Rru_A0934	0.79	-0.8
1,113,669	+		Rru_A0934	0.79	-1.9
1,113,670	-		Rru_A0934	0.79	-0.4
1,113,823	-		Rru_A0934	0.88	-0.2
1,113,823	-		Rru_A0934	0.88	-0.3
1,113,823	-		Rru_A0934	0.88	-0.3
1,113,823	-		Rru_A0934	0.88	-1.6
1,113,832	+		Rru_A0934	0.89	-2.3
1,113,832	+		Rru_A0934	0.89	-0.8
1,113,969	+				-0.8
1,113,969	+				-0.2
1,113,970	-				-0.3
1,113,970	-				+0.5
1,113,970	-				+1.6
1,114,114	+				+1.5
1,114,114	+				-0.2
1,114,114	+				-0.8
1,114,115	-				-0.6
1,114,147	+				-2.4
1,114,164	+				-2.6
1,114,164	+				+1.5
1,114,165	-				+1.1
1,114,165	-				-0.3
1,114,165	-				-0.7
1,114,165	-				-1.4
1,114,168	-				-1.1
1,114,200	+				-0.8
1,114,201	-				-1.2
1,114,288	-		Rru_A0935	0.18	-2.0
1,114,430	-		Rru_A0935	0.34	-1.6
1,114,485	+		Rru_A0935	0.40	+0.2
1,114,485	+		Rru_A0935	0.40	+0.3
1,114,486	-		Rru_A0935	0.40	-0.0
1,114,504	+		Rru_A0935	0.43	-1.4
1,114,504	+		Rru_A0935	0.43	-3.0
1,114,504	+		Rru_A0935	0.43	-2.4
1,114,504	+		Rru_A0935	0.43	-1.0
1,114,505	-		Rru_A0935	0.43	+0.4
1,114,510	-		Rru_A0935	0.43	-0.5
1,114,510	-		Rru_A0935	0.43	+0.9
1,114,510	-		Rru_A0935	0.43	-1.3
1,114,516	+		Rru_A0935	0.44	+0.8
1,114,517	-		Rru_A0935	0.44	+0.9
1,114,517	-		Rru_A0935	0.44	+0.8
1,114,517	-		Rru_A0935	0.44	+0.9
1,114,517	-		Rru_A0935	0.44	+2.4
1,114,519	-		Rru_A0935	0.44	+2.6
1,114,528	+		Rru_A0935	0.45	-1.9
1,114,529	-		Rru_A0935	0.45	+1.5
1,114,563	+		Rru_A0935	0.49	+4.1
1,114,563	+		Rru_A0935	0.49	-1.0
1,114,563	+		Rru_A0935	0.49	+1.6
1,114,563	+		Rru_A0935	0.49	-2.7
1,114,564	-		Rru_A0935	0.49	-3.5
1,114,564	-		Rru_A0935	0.49	+0.8
1,114,567	+		Rru_A0935	0.50	+1.1
1,114,568	-		Rru_A0935	0.50	-0.1
1,114,568	-		Rru_A0935	0.50	-0.5
1,114,568	-		Rru_A0935	0.50	+1.3
1,114,681	+		Rru_A0935	0.63	-1.9
1,114,681	+		Rru_A0935	0.63	-1.7
1,114,681	+		Rru_A0935	0.63	-3.1
1,114,682	-		Rru_A0935	0.63	+1.4
1,114,682	-		Rru_A0935	0.63	-1.2
1,114,687	+		Rru_A0935	0.64	-1.5
1,114,687	+		Rru_A0935	0.64	-0.9
1,114,687	+		Rru_A0935	0.64	-0.2
1,114,687	+		Rru_A0935	0.64	+0.8
1,114,687	+		Rru_A0935	0.64	+1.2
1,114,687	+		Rru_A0935	0.64	-2.5
1,114,687	+		Rru_A0935	0.64	-1.6
1,114,688	-		Rru_A0935	0.64	+0.2
1,114,688	-		Rru_A0935	0.64	-2.3
1,114,688	-		Rru_A0935	0.64	+1.6
1,114,689	+		Rru_A0935	0.64	+0.4
1,114,690	-		Rru_A0935	0.64	+2.5
1,114,690	-		Rru_A0935	0.64	-0.0
1,114,753	+		Rru_A0935	0.71	+0.2
1,114,753	+		Rru_A0935	0.71	-0.2
1,114,753	+		Rru_A0935	0.71	-1.2
1,114,753	+		Rru_A0935	0.71	+1.8
1,114,754	-		Rru_A0935	0.71	+1.5
1,114,754	-		Rru_A0935	0.71	-0.1
1,114,754	-		Rru_A0935	0.71	+0.4
1,114,755	+		Rru_A0935	0.72	-0.9
1,114,756	-		Rru_A0935	0.72	-1.6
1,114,831	+		Rru_A0935	0.80	+0.9
1,114,831	+		Rru_A0935	0.80	-2.3
1,114,832	-		Rru_A0935	0.80	-0.2
1,114,868	+		Rru_A0935	0.85	-0.2
1,114,869	-		Rru_A0935	0.85	-2.0
1,114,869	-		Rru_A0935	0.85	-1.0
1,114,872	+		Rru_A0935	0.85	-2.8
1,114,883	-		Rru_A0935	0.86	+1.4
1,114,970	-				-0.9
1,114,991	-				+1.2