Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0838

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11723550 and 11438796 are separated by 0 nucleotides11438796 and 11581159 overlap by 35 nucleotides11581159 and 11723551 overlap by 35 nucleotides11723551 and 11438797 are separated by 0 nucleotides11438797 and 11581160 overlap by 31 nucleotides11581160 and 11723552 overlap by 31 nucleotides11723552 and 11438798 are separated by 0 nucleotides11438798 and 11581161 overlap by 35 nucleotides11581161 and 11723553 overlap by 35 nucleotides11723553 and 11438799 are separated by 0 nucleotides11438799 and 11581162 overlap by 31 nucleotides11581162 and 11723554 overlap by 31 nucleotides11723554 and 11438800 are separated by 0 nucleotides11438800 and 11581163 overlap by 35 nucleotides11581163 and 11723555 overlap by 35 nucleotides11723555 and 11438801 are separated by 0 nucleotides11438801 and 11581164 overlap by 31 nucleotides11581164 and 11723556 overlap by 31 nucleotides11723556 and 11438802 are separated by 0 nucleotides11438802 and 11581165 overlap by 35 nucleotides11581165 and 11723557 overlap by 35 nucleotides11723557 and 11438803 are separated by 0 nucleotides11438803 and 11581166 overlap by 31 nucleotides11581166 and 11723558 overlap by 31 nucleotides11723558 and 11438804 are separated by 0 nucleotides11438804 and 11581167 overlap by 35 nucleotides11581167 and 11723559 overlap by 35 nucleotides11723559 and 11438805 are separated by 0 nucleotides11438805 and 11581168 overlap by 31 nucleotides11581168 and 11723560 overlap by 31 nucleotides11723560 and 11438806 are separated by 0 nucleotides11438806 and 11581169 overlap by 35 nucleotides11581169 and 11723561 overlap by 35 nucleotides11723561 and 11438807 are separated by 0 nucleotides11438807 and 11581170 overlap by 31 nucleotides11581170 and 11723562 overlap by 31 nucleotides11723562 and 11438808 are separated by 0 nucleotides11438808 and 11581171 overlap by 35 nucleotides11581171 and 11723563 overlap by 35 nucleotides11723563 and Rru_A0838 are separated by 566 nucleotidesRru_A0838 and Rru_A0839 are separated by 161 nucleotides Rru_A0837: Rru_A0837 - Leucine-rich repeat (NCBI), at 992,802 to 996,059 _A0837 11438795 - no description, at 995,343 to 995,373 11438795 11581158 - no description, at 995,343 to 995,373 11581158 11723550 - no description, at 995,343 to 995,373 11723550 11438796 - no description, at 995,374 to 995,408 11438796 11581159 - no description, at 995,374 to 995,408 11581159 11723551 - no description, at 995,374 to 995,408 11723551 11438797 - no description, at 995,409 to 995,439 11438797 11581160 - no description, at 995,409 to 995,439 11581160 11723552 - no description, at 995,409 to 995,439 11723552 11438798 - no description, at 995,440 to 995,474 11438798 11581161 - no description, at 995,440 to 995,474 11581161 11723553 - no description, at 995,440 to 995,474 11723553 11438799 - no description, at 995,475 to 995,505 11438799 11581162 - no description, at 995,475 to 995,505 11581162 11723554 - no description, at 995,475 to 995,505 11723554 11438800 - no description, at 995,506 to 995,540 11438800 11581163 - no description, at 995,506 to 995,540 11581163 11723555 - no description, at 995,506 to 995,540 11723555 11438801 - no description, at 995,541 to 995,571 11438801 11581164 - no description, at 995,541 to 995,571 11581164 11723556 - no description, at 995,541 to 995,571 11723556 11438802 - no description, at 995,572 to 995,606 11438802 11581165 - no description, at 995,572 to 995,606 11581165 11723557 - no description, at 995,572 to 995,606 11723557 11438803 - no description, at 995,607 to 995,637 11438803 11581166 - no description, at 995,607 to 995,637 11581166 11723558 - no description, at 995,607 to 995,637 11723558 11438804 - no description, at 995,638 to 995,672 11438804 11581167 - no description, at 995,638 to 995,672 11581167 11723559 - no description, at 995,638 to 995,672 11723559 11438805 - no description, at 995,673 to 995,703 11438805 11581168 - no description, at 995,673 to 995,703 11581168 11723560 - no description, at 995,673 to 995,703 11723560 11438806 - no description, at 995,704 to 995,738 11438806 11581169 - no description, at 995,704 to 995,738 11581169 11723561 - no description, at 995,704 to 995,738 11723561 11438807 - no description, at 995,739 to 995,769 11438807 11581170 - no description, at 995,739 to 995,769 11581170 11723562 - no description, at 995,739 to 995,769 11723562 11438808 - no description, at 995,770 to 995,804 11438808 11581171 - no description, at 995,770 to 995,804 11581171 11723563 - no description, at 995,770 to 995,804 11723563 Rru_A0838: Rru_A0838 - TonB-dependent receptor (NCBI), at 996,371 to 998,386 _A0838 Rru_A0839: Rru_A0839 - Transcriptional Regulator, AraC family (NCBI), at 998,548 to 999,531 _A0839 Position (kb) 996 997 998 999Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 995.461 kb on - strandat 995.550 kb on - strandat 995.555 kb on - strandat 995.725 kb on - strandat 995.725 kb on - strandat 995.752 kb on + strandat 995.753 kb on - strandat 995.753 kb on - strandat 995.823 kb on + strandat 995.823 kb on + strandat 996.077 kb on + strandat 996.113 kb on - strandat 996.135 kb on - strandat 996.304 kb on + strandat 996.304 kb on + strandat 996.304 kb on + strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.305 kb on - strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.306 kb on + strandat 996.307 kb on - strandat 996.307 kb on - strandat 996.444 kb on + strandat 996.445 kb on - strandat 996.445 kb on - strandat 996.445 kb on - strandat 996.446 kb on + strandat 996.446 kb on + strandat 996.447 kb on - strandat 996.447 kb on - strandat 996.453 kb on + strandat 996.454 kb on - strandat 996.472 kb on + strandat 996.473 kb on - strandat 996.480 kb on + strandat 996.481 kb on - strandat 996.540 kb on + strandat 996.576 kb on + strand, within Rru_A0838at 996.636 kb on + strand, within Rru_A0838at 996.636 kb on + strand, within Rru_A0838at 996.636 kb on + strand, within Rru_A0838at 996.637 kb on - strand, within Rru_A0838at 996.663 kb on + strand, within Rru_A0838at 996.664 kb on - strand, within Rru_A0838at 996.664 kb on - strand, within Rru_A0838at 996.675 kb on + strand, within Rru_A0838at 996.695 kb on - strand, within Rru_A0838at 996.696 kb on + strand, within Rru_A0838at 996.696 kb on + strand, within Rru_A0838at 996.696 kb on + strand, within Rru_A0838at 996.696 kb on + strand, within Rru_A0838at 996.696 kb on + strand, within Rru_A0838at 996.696 kb on + strand, within Rru_A0838at 996.697 kb on - strand, within Rru_A0838at 996.697 kb on - strand, within Rru_A0838at 996.812 kb on - strand, within Rru_A0838at 996.812 kb on - strand, within Rru_A0838at 996.876 kb on + strand, within Rru_A0838at 996.876 kb on + strand, within Rru_A0838at 996.876 kb on + strand, within Rru_A0838at 996.876 kb on + strand, within Rru_A0838at 996.877 kb on - strand, within Rru_A0838at 996.877 kb on - strand, within Rru_A0838at 996.877 kb on - strand, within Rru_A0838at 996.877 kb on - strand, within Rru_A0838at 996.877 kb on - strand, within Rru_A0838at 996.877 kb on - strand, within Rru_A0838at 996.918 kb on + strand, within Rru_A0838at 996.919 kb on - strand, within Rru_A0838at 996.960 kb on + strand, within Rru_A0838at 996.961 kb on - strand, within Rru_A0838at 996.961 kb on - strand, within Rru_A0838at 997.012 kb on + strand, within Rru_A0838at 997.012 kb on + strand, within Rru_A0838at 997.012 kb on + strand, within Rru_A0838at 997.015 kb on - strand, within Rru_A0838at 997.063 kb on - strand, within Rru_A0838at 997.063 kb on - strand, within Rru_A0838at 997.111 kb on + strand, within Rru_A0838at 997.219 kb on - strand, within Rru_A0838at 997.299 kb on + strand, within Rru_A0838at 997.300 kb on - strand, within Rru_A0838at 997.300 kb on - strand, within Rru_A0838at 997.314 kb on + strand, within Rru_A0838at 997.318 kb on + strand, within Rru_A0838at 997.319 kb on - strand, within Rru_A0838at 997.319 kb on - strand, within Rru_A0838at 997.320 kb on + strand, within Rru_A0838at 997.321 kb on - strand, within Rru_A0838at 997.342 kb on - strand, within Rru_A0838at 997.375 kb on - strand, within Rru_A0838at 997.396 kb on - strand, within Rru_A0838at 997.397 kb on + strand, within Rru_A0838at 997.397 kb on + strand, within Rru_A0838at 997.397 kb on + strand, within Rru_A0838at 997.398 kb on - strand, within Rru_A0838at 997.398 kb on - strand, within Rru_A0838at 997.398 kb on - strand, within Rru_A0838at 997.431 kb on + strand, within Rru_A0838at 997.431 kb on + strand, within Rru_A0838at 997.431 kb on + strand, within Rru_A0838at 997.432 kb on - strand, within Rru_A0838at 997.509 kb on + strand, within Rru_A0838at 997.510 kb on - strand, within Rru_A0838at 997.608 kb on + strand, within Rru_A0838at 997.608 kb on + strand, within Rru_A0838at 997.609 kb on - strand, within Rru_A0838at 997.612 kb on - strand, within Rru_A0838at 997.683 kb on + strand, within Rru_A0838at 997.684 kb on - strand, within Rru_A0838at 997.684 kb on - strand, within Rru_A0838at 997.688 kb on + strand, within Rru_A0838at 997.688 kb on + strand, within Rru_A0838at 997.688 kb on + strand, within Rru_A0838at 997.688 kb on + strand, within Rru_A0838at 997.688 kb on + strand, within Rru_A0838at 997.689 kb on - strand, within Rru_A0838at 997.689 kb on - strand, within Rru_A0838at 997.689 kb on - strand, within Rru_A0838at 998.005 kb on - strand, within Rru_A0838at 998.005 kb on - strand, within Rru_A0838at 998.008 kb on + strand, within Rru_A0838at 998.059 kb on - strand, within Rru_A0838at 998.101 kb on - strand, within Rru_A0838at 998.264 kb on + strandat 998.265 kb on - strandat 998.265 kb on - strandat 998.265 kb on - strandat 998.353 kb on + strandat 998.353 kb on + strandat 998.354 kb on - strandat 998.354 kb on - strandat 998.895 kb on - strand, within Rru_A0839at 999.124 kb on + strand, within Rru_A0839at 999.124 kb on + strand, within Rru_A0839at 999.124 kb on + strand, within Rru_A0839at 999.124 kb on + strand, within Rru_A0839at 999.125 kb on - strand, within Rru_A0839at 999.125 kb on - strand, within Rru_A0839at 999.125 kb on - strand, within Rru_A0839at 999.164 kb on + strand, within Rru_A0839at 999.354 kb on + strand, within Rru_A0839at 999.354 kb on + strand, within Rru_A0839at 999.355 kb on - strand, within Rru_A0839at 999.355 kb on - strand, within Rru_A0839at 999.355 kb on - strand, within Rru_A0839at 999.355 kb on - strand, within Rru_A0839

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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995,461 - -0.6
995,550 - +1.3
995,555 - -0.4
995,725 - +0.4
995,725 - +0.4
995,752 + -0.3
995,753 - +1.2
995,753 - -2.0
995,823 + -0.6
995,823 + +0.5
996,077 + -2.2
996,113 - +1.3
996,135 - -0.8
996,304 + +0.3
996,304 + -0.3
996,304 + -2.0
996,305 - -2.5
996,305 - +1.5
996,305 - +0.8
996,305 - -0.7
996,305 - -0.5
996,305 - +0.1
996,305 - +1.8
996,306 + -0.7
996,306 + -1.9
996,306 + +2.5
996,306 + +0.2
996,306 + -0.2
996,306 + +2.0
996,307 - -1.2
996,307 - -0.4
996,444 + -0.2
996,445 - -1.2
996,445 - -0.3
996,445 - +0.8
996,446 + +0.7
996,446 + -0.5
996,447 - -0.0
996,447 - +1.1
996,453 + -1.9
996,454 - +1.0
996,472 + -2.0
996,473 - -2.5
996,480 + -1.0
996,481 - +1.0
996,540 + -1.3
996,576 + Rru_A0838 0.10 -1.0
996,636 + Rru_A0838 0.13 +0.3
996,636 + Rru_A0838 0.13 -1.5
996,636 + Rru_A0838 0.13 -0.5
996,637 - Rru_A0838 0.13 -0.8
996,663 + Rru_A0838 0.14 +1.6
996,664 - Rru_A0838 0.15 -0.5
996,664 - Rru_A0838 0.15 +0.6
996,675 + Rru_A0838 0.15 +1.9
996,695 - Rru_A0838 0.16 +1.0
996,696 + Rru_A0838 0.16 -1.5
996,696 + Rru_A0838 0.16 -1.8
996,696 + Rru_A0838 0.16 -1.4
996,696 + Rru_A0838 0.16 +1.6
996,696 + Rru_A0838 0.16 -1.1
996,696 + Rru_A0838 0.16 +2.3
996,697 - Rru_A0838 0.16 -3.5
996,697 - Rru_A0838 0.16 -1.2
996,812 - Rru_A0838 0.22 -2.6
996,812 - Rru_A0838 0.22 +0.6
996,876 + Rru_A0838 0.25 -0.2
996,876 + Rru_A0838 0.25 -3.4
996,876 + Rru_A0838 0.25 -0.3
996,876 + Rru_A0838 0.25 -1.8
996,877 - Rru_A0838 0.25 +2.6
996,877 - Rru_A0838 0.25 +1.1
996,877 - Rru_A0838 0.25 -0.2
996,877 - Rru_A0838 0.25 -1.2
996,877 - Rru_A0838 0.25 -0.1
996,877 - Rru_A0838 0.25 +0.2
996,918 + Rru_A0838 0.27 -3.6
996,919 - Rru_A0838 0.27 -1.4
996,960 + Rru_A0838 0.29 +1.9
996,961 - Rru_A0838 0.29 -3.0
996,961 - Rru_A0838 0.29 -2.1
997,012 + Rru_A0838 0.32 -0.2
997,012 + Rru_A0838 0.32 -0.4
997,012 + Rru_A0838 0.32 -4.4
997,015 - Rru_A0838 0.32 +0.1
997,063 - Rru_A0838 0.34 +0.8
997,063 - Rru_A0838 0.34 +0.5
997,111 + Rru_A0838 0.37 -0.8
997,219 - Rru_A0838 0.42 +0.4
997,299 + Rru_A0838 0.46 -0.2
997,300 - Rru_A0838 0.46 +1.8
997,300 - Rru_A0838 0.46 -1.2
997,314 + Rru_A0838 0.47 -2.5
997,318 + Rru_A0838 0.47 -0.8
997,319 - Rru_A0838 0.47 +2.1
997,319 - Rru_A0838 0.47 -1.2
997,320 + Rru_A0838 0.47 +0.9
997,321 - Rru_A0838 0.47 -1.9
997,342 - Rru_A0838 0.48 -1.7
997,375 - Rru_A0838 0.50 -0.7
997,396 - Rru_A0838 0.51 +0.5
997,397 + Rru_A0838 0.51 +1.8
997,397 + Rru_A0838 0.51 -0.3
997,397 + Rru_A0838 0.51 -0.8
997,398 - Rru_A0838 0.51 +1.1
997,398 - Rru_A0838 0.51 -1.3
997,398 - Rru_A0838 0.51 -0.7
997,431 + Rru_A0838 0.53 +0.1
997,431 + Rru_A0838 0.53 -0.8
997,431 + Rru_A0838 0.53 -3.4
997,432 - Rru_A0838 0.53 -2.6
997,509 + Rru_A0838 0.56 +0.8
997,510 - Rru_A0838 0.56 -1.0
997,608 + Rru_A0838 0.61 -2.2
997,608 + Rru_A0838 0.61 -1.0
997,609 - Rru_A0838 0.61 -2.7
997,612 - Rru_A0838 0.62 -2.0
997,683 + Rru_A0838 0.65 -0.5
997,684 - Rru_A0838 0.65 +1.2
997,684 - Rru_A0838 0.65 -2.7
997,688 + Rru_A0838 0.65 +0.5
997,688 + Rru_A0838 0.65 -1.4
997,688 + Rru_A0838 0.65 +0.6
997,688 + Rru_A0838 0.65 -0.1
997,688 + Rru_A0838 0.65 +0.0
997,689 - Rru_A0838 0.65 +1.9
997,689 - Rru_A0838 0.65 -0.9
997,689 - Rru_A0838 0.65 -1.6
998,005 - Rru_A0838 0.81 -2.5
998,005 - Rru_A0838 0.81 -1.1
998,008 + Rru_A0838 0.81 -1.4
998,059 - Rru_A0838 0.84 -1.2
998,101 - Rru_A0838 0.86 -1.5
998,264 + +1.8
998,265 - +0.1
998,265 - -2.1
998,265 - -0.8
998,353 + +0.8
998,353 + +1.1
998,354 - -0.6
998,354 - +0.3
998,895 - Rru_A0839 0.35 +2.4
999,124 + Rru_A0839 0.59 -0.6
999,124 + Rru_A0839 0.59 +1.4
999,124 + Rru_A0839 0.59 -1.1
999,124 + Rru_A0839 0.59 +1.2
999,125 - Rru_A0839 0.59 -2.2
999,125 - Rru_A0839 0.59 +0.3
999,125 - Rru_A0839 0.59 +2.8
999,164 + Rru_A0839 0.63 -1.3
999,354 + Rru_A0839 0.82 +0.1
999,354 + Rru_A0839 0.82 -1.7
999,355 - Rru_A0839 0.82 -3.4
999,355 - Rru_A0839 0.82 -1.9
999,355 - Rru_A0839 0.82 -1.8
999,355 - Rru_A0839 0.82 -0.8

Or see this region's nucleotide sequence