Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0831

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0830 and Rru_A0831 overlap by 4 nucleotidesRru_A0831 and Rru_A0832 are separated by 20 nucleotidesRru_A0832 and Rru_A0833 overlap by 4 nucleotides Rru_A0830: Rru_A0830 - CRISPR-associated protein, CT1133 (NCBI), at 984,363 to 986,186 _A0830 Rru_A0831: Rru_A0831 - CRISPR-associated protein TM1801 (NCBI), at 986,183 to 987,136 _A0831 Rru_A0832: Rru_A0832 - Protein of unknown function DUF83 (NCBI), at 987,157 to 987,843 _A0832 Rru_A0833: Rru_A0833 - Protein of unknown function DUF48 (NCBI), at 987,840 to 988,874 _A0833 Position (kb) 986 987 988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 985.295 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.435 kb on - strand, within Rru_A0830at 985.444 kb on - strand, within Rru_A0830at 985.444 kb on - strand, within Rru_A0830at 985.486 kb on - strand, within Rru_A0830at 985.566 kb on + strand, within Rru_A0830at 985.566 kb on + strand, within Rru_A0830at 985.566 kb on + strand, within Rru_A0830at 985.567 kb on - strand, within Rru_A0830at 985.567 kb on - strand, within Rru_A0830at 985.577 kb on + strand, within Rru_A0830at 985.578 kb on - strand, within Rru_A0830at 985.643 kb on + strand, within Rru_A0830at 985.644 kb on - strand, within Rru_A0830at 985.644 kb on - strand, within Rru_A0830at 985.644 kb on - strand, within Rru_A0830at 985.739 kb on + strand, within Rru_A0830at 985.753 kb on - strand, within Rru_A0830at 985.753 kb on - strand, within Rru_A0830at 985.753 kb on - strand, within Rru_A0830at 985.809 kb on + strand, within Rru_A0830at 985.842 kb on + strand, within Rru_A0830at 986.053 kb on - strandat 986.269 kb on + strandat 986.269 kb on + strandat 986.342 kb on + strand, within Rru_A0831at 986.342 kb on + strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.381 kb on - strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.769 kb on - strand, within Rru_A0831at 986.969 kb on - strand, within Rru_A0831at 986.969 kb on - strand, within Rru_A0831at 987.239 kb on - strand, within Rru_A0832at 987.401 kb on + strand, within Rru_A0832at 987.478 kb on + strand, within Rru_A0832at 987.478 kb on + strand, within Rru_A0832at 987.479 kb on - strand, within Rru_A0832at 987.589 kb on + strand, within Rru_A0832at 987.589 kb on + strand, within Rru_A0832at 987.589 kb on + strand, within Rru_A0832at 987.590 kb on - strand, within Rru_A0832at 987.864 kb on + strandat 987.865 kb on - strandat 987.956 kb on + strand, within Rru_A0833at 987.956 kb on + strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.990 kb on + strand, within Rru_A0833at 987.990 kb on + strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 988.122 kb on + strand, within Rru_A0833at 988.122 kb on + strand, within Rru_A0833at 988.123 kb on - strand, within Rru_A0833

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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985,295 + Rru_A0830 0.51 -2.0
985,350 + Rru_A0830 0.54 -2.6
985,350 + Rru_A0830 0.54 +1.1
985,350 + Rru_A0830 0.54 +2.4
985,350 + Rru_A0830 0.54 +0.3
985,351 - Rru_A0830 0.54 -1.9
985,351 - Rru_A0830 0.54 +2.2
985,351 - Rru_A0830 0.54 -0.2
985,435 - Rru_A0830 0.59 +2.0
985,444 - Rru_A0830 0.59 +1.8
985,444 - Rru_A0830 0.59 -0.6
985,486 - Rru_A0830 0.62 -2.2
985,566 + Rru_A0830 0.66 -3.2
985,566 + Rru_A0830 0.66 +0.8
985,566 + Rru_A0830 0.66 -1.4
985,567 - Rru_A0830 0.66 +1.0
985,567 - Rru_A0830 0.66 +1.6
985,577 + Rru_A0830 0.67 -0.9
985,578 - Rru_A0830 0.67 +0.4
985,643 + Rru_A0830 0.70 -3.1
985,644 - Rru_A0830 0.70 +0.1
985,644 - Rru_A0830 0.70 -0.6
985,644 - Rru_A0830 0.70 +1.2
985,739 + Rru_A0830 0.75 -0.8
985,753 - Rru_A0830 0.76 -0.5
985,753 - Rru_A0830 0.76 +1.6
985,753 - Rru_A0830 0.76 -0.9
985,809 + Rru_A0830 0.79 +0.8
985,842 + Rru_A0830 0.81 -0.8
986,053 - +0.1
986,269 + +2.8
986,269 + -1.7
986,342 + Rru_A0831 0.17 -1.8
986,342 + Rru_A0831 0.17 +0.8
986,343 - Rru_A0831 0.17 -0.9
986,343 - Rru_A0831 0.17 -0.1
986,343 - Rru_A0831 0.17 +1.8
986,343 - Rru_A0831 0.17 +0.0
986,343 - Rru_A0831 0.17 -0.2
986,343 - Rru_A0831 0.17 -1.2
986,343 - Rru_A0831 0.17 -2.8
986,343 - Rru_A0831 0.17 +2.4
986,380 + Rru_A0831 0.21 +0.8
986,380 + Rru_A0831 0.21 -2.0
986,380 + Rru_A0831 0.21 +0.8
986,380 + Rru_A0831 0.21 -0.2
986,380 + Rru_A0831 0.21 -2.9
986,381 - Rru_A0831 0.21 +0.8
986,384 + Rru_A0831 0.21 -0.8
986,384 + Rru_A0831 0.21 +0.2
986,384 + Rru_A0831 0.21 -0.2
986,384 + Rru_A0831 0.21 -1.9
986,384 + Rru_A0831 0.21 -0.8
986,384 + Rru_A0831 0.21 -2.0
986,385 - Rru_A0831 0.21 +0.6
986,385 - Rru_A0831 0.21 -1.6
986,385 - Rru_A0831 0.21 +0.3
986,385 - Rru_A0831 0.21 -0.2
986,385 - Rru_A0831 0.21 -0.5
986,385 - Rru_A0831 0.21 +0.1
986,385 - Rru_A0831 0.21 +0.0
986,769 - Rru_A0831 0.61 -3.9
986,969 - Rru_A0831 0.82 -2.0
986,969 - Rru_A0831 0.82 -3.7
987,239 - Rru_A0832 0.12 +1.4
987,401 + Rru_A0832 0.36 -1.2
987,478 + Rru_A0832 0.47 -2.9
987,478 + Rru_A0832 0.47 -4.3
987,479 - Rru_A0832 0.47 +0.1
987,589 + Rru_A0832 0.63 +1.1
987,589 + Rru_A0832 0.63 -0.8
987,589 + Rru_A0832 0.63 -1.4
987,590 - Rru_A0832 0.63 -0.8
987,864 + -0.2
987,865 - -1.7
987,956 + Rru_A0833 0.11 +1.6
987,956 + Rru_A0833 0.11 -1.0
987,957 - Rru_A0833 0.11 +1.5
987,957 - Rru_A0833 0.11 -0.1
987,957 - Rru_A0833 0.11 -0.3
987,957 - Rru_A0833 0.11 -2.5
987,957 - Rru_A0833 0.11 -0.1
987,990 + Rru_A0833 0.14 -1.4
987,990 + Rru_A0833 0.14 -0.4
987,991 - Rru_A0833 0.15 -1.6
987,991 - Rru_A0833 0.15 -2.5
987,991 - Rru_A0833 0.15 -0.3
988,122 + Rru_A0833 0.27 -1.3
988,122 + Rru_A0833 0.27 -1.7
988,123 - Rru_A0833 0.27 +0.2

Or see this region's nucleotide sequence