Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0828 and Rru_A0829 are separated by 11 nucleotides Rru_A0829 and Rru_A0830 overlap by 4 nucleotides Rru_A0830 and Rru_A0831 overlap by 4 nucleotides Rru_A0831 and Rru_A0832 are separated by 20 nucleotides
Rru_A0828: Rru_A0828 - CRISPR-associated helicase Cas3, core (NCBI), at 981,431 to 983,689
_A0828
Rru_A0829: Rru_A0829 - CRISPR-associated protein, CT1134 (NCBI), at 983,701 to 984,366
_A0829
Rru_A0830: Rru_A0830 - CRISPR-associated protein, CT1133 (NCBI), at 984,363 to 986,186
_A0830
Rru_A0831: Rru_A0831 - CRISPR-associated protein TM1801 (NCBI), at 986,183 to 987,136
_A0831
Rru_A0832: Rru_A0832 - Protein of unknown function DUF83 (NCBI), at 987,157 to 987,843
_A0832
Position (kb) 984
985
986
987 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 983.687 kb on + strand at 983.688 kb on - strand at 983.782 kb on + strand, within Rru_A0829 at 983.782 kb on + strand, within Rru_A0829 at 983.782 kb on + strand, within Rru_A0829 at 983.782 kb on + strand, within Rru_A0829 at 983.782 kb on + strand, within Rru_A0829 at 983.783 kb on - strand, within Rru_A0829 at 984.040 kb on + strand, within Rru_A0829 at 984.040 kb on + strand, within Rru_A0829 at 984.040 kb on + strand, within Rru_A0829 at 984.041 kb on - strand, within Rru_A0829 at 984.041 kb on - strand, within Rru_A0829 at 984.090 kb on + strand, within Rru_A0829 at 984.090 kb on + strand, within Rru_A0829 at 984.112 kb on - strand, within Rru_A0829 at 984.112 kb on - strand, within Rru_A0829 at 984.393 kb on + strand at 984.393 kb on + strand at 984.394 kb on - strand at 984.449 kb on + strand at 984.450 kb on - strand at 984.451 kb on + strand at 984.535 kb on + strand at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.615 kb on + strand, within Rru_A0830 at 984.616 kb on - strand, within Rru_A0830 at 984.616 kb on - strand, within Rru_A0830 at 984.616 kb on - strand, within Rru_A0830 at 984.616 kb on - strand, within Rru_A0830 at 984.616 kb on - strand, within Rru_A0830 at 984.846 kb on + strand, within Rru_A0830 at 984.846 kb on + strand, within Rru_A0830 at 984.846 kb on + strand, within Rru_A0830 at 984.858 kb on - strand, within Rru_A0830 at 984.979 kb on + strand, within Rru_A0830 at 985.003 kb on + strand, within Rru_A0830 at 985.017 kb on + strand, within Rru_A0830 at 985.017 kb on + strand, within Rru_A0830 at 985.017 kb on + strand, within Rru_A0830 at 985.018 kb on - strand, within Rru_A0830 at 985.042 kb on - strand, within Rru_A0830 at 985.097 kb on + strand, within Rru_A0830 at 985.130 kb on + strand, within Rru_A0830 at 985.131 kb on - strand, within Rru_A0830 at 985.295 kb on + strand, within Rru_A0830 at 985.350 kb on + strand, within Rru_A0830 at 985.350 kb on + strand, within Rru_A0830 at 985.350 kb on + strand, within Rru_A0830 at 985.350 kb on + strand, within Rru_A0830 at 985.351 kb on - strand, within Rru_A0830 at 985.351 kb on - strand, within Rru_A0830 at 985.351 kb on - strand, within Rru_A0830 at 985.435 kb on - strand, within Rru_A0830 at 985.444 kb on - strand, within Rru_A0830 at 985.444 kb on - strand, within Rru_A0830 at 985.486 kb on - strand, within Rru_A0830 at 985.566 kb on + strand, within Rru_A0830 at 985.566 kb on + strand, within Rru_A0830 at 985.566 kb on + strand, within Rru_A0830 at 985.567 kb on - strand, within Rru_A0830 at 985.567 kb on - strand, within Rru_A0830 at 985.577 kb on + strand, within Rru_A0830 at 985.578 kb on - strand, within Rru_A0830 at 985.643 kb on + strand, within Rru_A0830 at 985.644 kb on - strand, within Rru_A0830 at 985.644 kb on - strand, within Rru_A0830 at 985.644 kb on - strand, within Rru_A0830 at 985.739 kb on + strand, within Rru_A0830 at 985.753 kb on - strand, within Rru_A0830 at 985.753 kb on - strand, within Rru_A0830 at 985.753 kb on - strand, within Rru_A0830 at 985.809 kb on + strand, within Rru_A0830 at 985.842 kb on + strand, within Rru_A0830 at 986.053 kb on - strand at 986.269 kb on + strand at 986.269 kb on + strand at 986.342 kb on + strand, within Rru_A0831 at 986.342 kb on + strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.343 kb on - strand, within Rru_A0831 at 986.380 kb on + strand, within Rru_A0831 at 986.380 kb on + strand, within Rru_A0831 at 986.380 kb on + strand, within Rru_A0831 at 986.380 kb on + strand, within Rru_A0831 at 986.380 kb on + strand, within Rru_A0831 at 986.381 kb on - strand, within Rru_A0831 at 986.384 kb on + strand, within Rru_A0831 at 986.384 kb on + strand, within Rru_A0831 at 986.384 kb on + strand, within Rru_A0831 at 986.384 kb on + strand, within Rru_A0831 at 986.384 kb on + strand, within Rru_A0831 at 986.384 kb on + strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.385 kb on - strand, within Rru_A0831 at 986.769 kb on - strand, within Rru_A0831 at 986.969 kb on - strand, within Rru_A0831 at 986.969 kb on - strand, within Rru_A0831
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 983,687 + -3.0 983,688 - +1.3 983,782 + Rru_A0829 0.12 -2.4 983,782 + Rru_A0829 0.12 +3.4 983,782 + Rru_A0829 0.12 -0.2 983,782 + Rru_A0829 0.12 -1.2 983,782 + Rru_A0829 0.12 -1.0 983,783 - Rru_A0829 0.12 -1.2 984,040 + Rru_A0829 0.51 -2.0 984,040 + Rru_A0829 0.51 +3.4 984,040 + Rru_A0829 0.51 +0.2 984,041 - Rru_A0829 0.51 +0.9 984,041 - Rru_A0829 0.51 -1.6 984,090 + Rru_A0829 0.58 +5.5 984,090 + Rru_A0829 0.58 +0.9 984,112 - Rru_A0829 0.62 -0.2 984,112 - Rru_A0829 0.62 -0.6 984,393 + -1.3 984,393 + -1.7 984,394 - +1.4 984,449 + -0.4 984,450 - -0.2 984,451 + -2.2 984,535 + -1.1 984,615 + Rru_A0830 0.14 -2.5 984,615 + Rru_A0830 0.14 -2.0 984,615 + Rru_A0830 0.14 +0.8 984,615 + Rru_A0830 0.14 -0.7 984,615 + Rru_A0830 0.14 +1.8 984,615 + Rru_A0830 0.14 -3.1 984,615 + Rru_A0830 0.14 -1.0 984,615 + Rru_A0830 0.14 +1.8 984,615 + Rru_A0830 0.14 +0.8 984,616 - Rru_A0830 0.14 -0.4 984,616 - Rru_A0830 0.14 -2.1 984,616 - Rru_A0830 0.14 -1.2 984,616 - Rru_A0830 0.14 +4.8 984,616 - Rru_A0830 0.14 +1.4 984,846 + Rru_A0830 0.26 +0.4 984,846 + Rru_A0830 0.26 +0.2 984,846 + Rru_A0830 0.26 -0.1 984,858 - Rru_A0830 0.27 +0.6 984,979 + Rru_A0830 0.34 -0.6 985,003 + Rru_A0830 0.35 -2.6 985,017 + Rru_A0830 0.36 -0.2 985,017 + Rru_A0830 0.36 -3.4 985,017 + Rru_A0830 0.36 -1.8 985,018 - Rru_A0830 0.36 -1.6 985,042 - Rru_A0830 0.37 -2.4 985,097 + Rru_A0830 0.40 +1.6 985,130 + Rru_A0830 0.42 -0.9 985,131 - Rru_A0830 0.42 +1.8 985,295 + Rru_A0830 0.51 -2.0 985,350 + Rru_A0830 0.54 -2.6 985,350 + Rru_A0830 0.54 +1.1 985,350 + Rru_A0830 0.54 +2.4 985,350 + Rru_A0830 0.54 +0.3 985,351 - Rru_A0830 0.54 -1.9 985,351 - Rru_A0830 0.54 +2.2 985,351 - Rru_A0830 0.54 -0.2 985,435 - Rru_A0830 0.59 +2.0 985,444 - Rru_A0830 0.59 +1.8 985,444 - Rru_A0830 0.59 -0.6 985,486 - Rru_A0830 0.62 -2.2 985,566 + Rru_A0830 0.66 -3.2 985,566 + Rru_A0830 0.66 +0.8 985,566 + Rru_A0830 0.66 -1.4 985,567 - Rru_A0830 0.66 +1.0 985,567 - Rru_A0830 0.66 +1.6 985,577 + Rru_A0830 0.67 -0.9 985,578 - Rru_A0830 0.67 +0.4 985,643 + Rru_A0830 0.70 -3.1 985,644 - Rru_A0830 0.70 +0.1 985,644 - Rru_A0830 0.70 -0.6 985,644 - Rru_A0830 0.70 +1.2 985,739 + Rru_A0830 0.75 -0.8 985,753 - Rru_A0830 0.76 -0.5 985,753 - Rru_A0830 0.76 +1.6 985,753 - Rru_A0830 0.76 -0.9 985,809 + Rru_A0830 0.79 +0.8 985,842 + Rru_A0830 0.81 -0.8 986,053 - +0.1 986,269 + +2.8 986,269 + -1.7 986,342 + Rru_A0831 0.17 -1.8 986,342 + Rru_A0831 0.17 +0.8 986,343 - Rru_A0831 0.17 -0.9 986,343 - Rru_A0831 0.17 -0.1 986,343 - Rru_A0831 0.17 +1.8 986,343 - Rru_A0831 0.17 +0.0 986,343 - Rru_A0831 0.17 -0.2 986,343 - Rru_A0831 0.17 -1.2 986,343 - Rru_A0831 0.17 -2.8 986,343 - Rru_A0831 0.17 +2.4 986,380 + Rru_A0831 0.21 +0.8 986,380 + Rru_A0831 0.21 -2.0 986,380 + Rru_A0831 0.21 +0.8 986,380 + Rru_A0831 0.21 -0.2 986,380 + Rru_A0831 0.21 -2.9 986,381 - Rru_A0831 0.21 +0.8 986,384 + Rru_A0831 0.21 -0.8 986,384 + Rru_A0831 0.21 +0.2 986,384 + Rru_A0831 0.21 -0.2 986,384 + Rru_A0831 0.21 -1.9 986,384 + Rru_A0831 0.21 -0.8 986,384 + Rru_A0831 0.21 -2.0 986,385 - Rru_A0831 0.21 +0.6 986,385 - Rru_A0831 0.21 -1.6 986,385 - Rru_A0831 0.21 +0.3 986,385 - Rru_A0831 0.21 -0.2 986,385 - Rru_A0831 0.21 -0.5 986,385 - Rru_A0831 0.21 +0.1 986,385 - Rru_A0831 0.21 +0.0 986,769 - Rru_A0831 0.61 -3.9 986,969 - Rru_A0831 0.82 -2.0 986,969 - Rru_A0831 0.82 -3.7
Or see this region's nucleotide sequence