Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0829

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0828 and Rru_A0829 are separated by 11 nucleotidesRru_A0829 and Rru_A0830 overlap by 4 nucleotides Rru_A0828: Rru_A0828 - CRISPR-associated helicase Cas3, core (NCBI), at 981,431 to 983,689 _A0828 Rru_A0829: Rru_A0829 - CRISPR-associated protein, CT1134 (NCBI), at 983,701 to 984,366 _A0829 Rru_A0830: Rru_A0830 - CRISPR-associated protein, CT1133 (NCBI), at 984,363 to 986,186 _A0830 Position (kb) 983 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 982.806 kb on + strand, within Rru_A0828at 982.836 kb on + strand, within Rru_A0828at 982.849 kb on + strand, within Rru_A0828at 982.850 kb on - strand, within Rru_A0828at 982.931 kb on + strand, within Rru_A0828at 982.932 kb on - strand, within Rru_A0828at 982.932 kb on - strand, within Rru_A0828at 982.932 kb on - strand, within Rru_A0828at 983.167 kb on + strand, within Rru_A0828at 983.167 kb on + strand, within Rru_A0828at 983.168 kb on - strand, within Rru_A0828at 983.205 kb on - strand, within Rru_A0828at 983.262 kb on - strand, within Rru_A0828at 983.276 kb on + strand, within Rru_A0828at 983.277 kb on - strand, within Rru_A0828at 983.277 kb on - strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.687 kb on + strandat 983.688 kb on - strandat 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.783 kb on - strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.041 kb on - strand, within Rru_A0829at 984.041 kb on - strand, within Rru_A0829at 984.090 kb on + strand, within Rru_A0829at 984.090 kb on + strand, within Rru_A0829at 984.112 kb on - strand, within Rru_A0829at 984.112 kb on - strand, within Rru_A0829at 984.393 kb on + strandat 984.393 kb on + strandat 984.394 kb on - strandat 984.449 kb on + strandat 984.450 kb on - strandat 984.451 kb on + strandat 984.535 kb on + strandat 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.846 kb on + strand, within Rru_A0830at 984.846 kb on + strand, within Rru_A0830at 984.846 kb on + strand, within Rru_A0830at 984.858 kb on - strand, within Rru_A0830at 984.979 kb on + strand, within Rru_A0830at 985.003 kb on + strand, within Rru_A0830at 985.017 kb on + strand, within Rru_A0830at 985.017 kb on + strand, within Rru_A0830at 985.017 kb on + strand, within Rru_A0830at 985.018 kb on - strand, within Rru_A0830at 985.042 kb on - strand, within Rru_A0830at 985.097 kb on + strand, within Rru_A0830at 985.130 kb on + strand, within Rru_A0830at 985.131 kb on - strand, within Rru_A0830at 985.295 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
982,806 + Rru_A0828 0.61 +1.8
982,836 + Rru_A0828 0.62 +0.8
982,849 + Rru_A0828 0.63 -2.1
982,850 - Rru_A0828 0.63 -0.6
982,931 + Rru_A0828 0.66 -0.6
982,932 - Rru_A0828 0.66 +0.2
982,932 - Rru_A0828 0.66 -0.6
982,932 - Rru_A0828 0.66 -1.3
983,167 + Rru_A0828 0.77 -0.5
983,167 + Rru_A0828 0.77 -0.6
983,168 - Rru_A0828 0.77 +1.2
983,205 - Rru_A0828 0.79 +1.0
983,262 - Rru_A0828 0.81 -0.6
983,276 + Rru_A0828 0.82 +0.6
983,277 - Rru_A0828 0.82 -1.8
983,277 - Rru_A0828 0.82 -2.1
983,357 + Rru_A0828 0.85 -0.6
983,357 + Rru_A0828 0.85 -1.8
983,357 + Rru_A0828 0.85 -1.1
983,357 + Rru_A0828 0.85 +0.2
983,357 + Rru_A0828 0.85 +1.2
983,687 + -3.0
983,688 - +1.3
983,782 + Rru_A0829 0.12 -2.4
983,782 + Rru_A0829 0.12 +3.4
983,782 + Rru_A0829 0.12 -0.2
983,782 + Rru_A0829 0.12 -1.2
983,782 + Rru_A0829 0.12 -1.0
983,783 - Rru_A0829 0.12 -1.2
984,040 + Rru_A0829 0.51 -2.0
984,040 + Rru_A0829 0.51 +3.4
984,040 + Rru_A0829 0.51 +0.2
984,041 - Rru_A0829 0.51 +0.9
984,041 - Rru_A0829 0.51 -1.6
984,090 + Rru_A0829 0.58 +5.5
984,090 + Rru_A0829 0.58 +0.9
984,112 - Rru_A0829 0.62 -0.2
984,112 - Rru_A0829 0.62 -0.6
984,393 + -1.3
984,393 + -1.7
984,394 - +1.4
984,449 + -0.4
984,450 - -0.2
984,451 + -2.2
984,535 + -1.1
984,615 + Rru_A0830 0.14 -2.5
984,615 + Rru_A0830 0.14 -2.0
984,615 + Rru_A0830 0.14 +0.8
984,615 + Rru_A0830 0.14 -0.7
984,615 + Rru_A0830 0.14 +1.8
984,615 + Rru_A0830 0.14 -3.1
984,615 + Rru_A0830 0.14 -1.0
984,615 + Rru_A0830 0.14 +1.8
984,615 + Rru_A0830 0.14 +0.8
984,616 - Rru_A0830 0.14 -0.4
984,616 - Rru_A0830 0.14 -2.1
984,616 - Rru_A0830 0.14 -1.2
984,616 - Rru_A0830 0.14 +4.8
984,616 - Rru_A0830 0.14 +1.4
984,846 + Rru_A0830 0.26 +0.4
984,846 + Rru_A0830 0.26 +0.2
984,846 + Rru_A0830 0.26 -0.1
984,858 - Rru_A0830 0.27 +0.6
984,979 + Rru_A0830 0.34 -0.6
985,003 + Rru_A0830 0.35 -2.6
985,017 + Rru_A0830 0.36 -0.2
985,017 + Rru_A0830 0.36 -3.4
985,017 + Rru_A0830 0.36 -1.8
985,018 - Rru_A0830 0.36 -1.6
985,042 - Rru_A0830 0.37 -2.4
985,097 + Rru_A0830 0.40 +1.6
985,130 + Rru_A0830 0.42 -0.9
985,131 - Rru_A0830 0.42 +1.8
985,295 + Rru_A0830 0.51 -2.0
985,350 + Rru_A0830 0.54 -2.6
985,350 + Rru_A0830 0.54 +1.1
985,350 + Rru_A0830 0.54 +2.4
985,350 + Rru_A0830 0.54 +0.3
985,351 - Rru_A0830 0.54 -1.9
985,351 - Rru_A0830 0.54 +2.2
985,351 - Rru_A0830 0.54 -0.2

Or see this region's nucleotide sequence