Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0800

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0799 and Rru_A0800 are separated by 3 nucleotidesRru_A0800 and Rru_A0801 overlap by 4 nucleotidesRru_A0801 and Rru_A0802 are separated by 6 nucleotides Rru_A0799: Rru_A0799 - extracellular solute-binding protein, family 5 (NCBI), at 953,763 to 955,358 _A0799 Rru_A0800: Rru_A0800 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 955,362 to 956,432 _A0800 Rru_A0801: Rru_A0801 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 956,429 to 957,319 _A0801 Rru_A0802: Rru_A0802 - ABC transporter component (NCBI), at 957,326 to 958,156 _A0802 Position (kb) 955 956 957Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 954.418 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.442 kb on - strand, within Rru_A0799at 954.442 kb on - strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.445 kb on - strand, within Rru_A0799at 954.445 kb on - strand, within Rru_A0799at 954.485 kb on + strand, within Rru_A0799at 954.596 kb on + strand, within Rru_A0799at 954.597 kb on - strand, within Rru_A0799at 954.597 kb on - strand, within Rru_A0799at 954.624 kb on + strand, within Rru_A0799at 954.625 kb on - strand, within Rru_A0799at 954.625 kb on - strand, within Rru_A0799at 954.628 kb on - strand, within Rru_A0799at 954.628 kb on - strand, within Rru_A0799at 954.702 kb on + strand, within Rru_A0799at 954.702 kb on + strand, within Rru_A0799at 954.703 kb on - strand, within Rru_A0799at 954.703 kb on - strand, within Rru_A0799at 954.990 kb on + strand, within Rru_A0799at 954.990 kb on + strand, within Rru_A0799at 954.990 kb on + strand, within Rru_A0799at 954.991 kb on - strand, within Rru_A0799at 955.065 kb on + strand, within Rru_A0799at 955.066 kb on - strand, within Rru_A0799at 955.066 kb on - strand, within Rru_A0799at 955.206 kb on + strandat 955.206 kb on + strandat 955.325 kb on + strandat 955.325 kb on + strandat 955.326 kb on - strandat 955.335 kb on + strandat 955.356 kb on + strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.357 kb on - strandat 955.799 kb on + strand, within Rru_A0800at 955.825 kb on + strand, within Rru_A0800at 955.825 kb on + strand, within Rru_A0800at 955.825 kb on + strand, within Rru_A0800at 955.826 kb on - strand, within Rru_A0800at 955.826 kb on - strand, within Rru_A0800at 955.848 kb on + strand, within Rru_A0800at 955.896 kb on + strand, within Rru_A0800at 955.945 kb on - strand, within Rru_A0800at 956.062 kb on - strand, within Rru_A0800at 956.064 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.127 kb on + strand, within Rru_A0800at 956.128 kb on - strand, within Rru_A0800at 956.128 kb on - strand, within Rru_A0800at 956.128 kb on - strand, within Rru_A0800at 956.232 kb on + strand, within Rru_A0800at 956.232 kb on + strand, within Rru_A0800at 956.232 kb on + strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.233 kb on - strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.298 kb on + strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.299 kb on - strand, within Rru_A0800at 956.603 kb on + strand, within Rru_A0801at 956.690 kb on - strand, within Rru_A0801at 956.830 kb on + strand, within Rru_A0801at 956.831 kb on - strand, within Rru_A0801at 957.331 kb on + strandat 957.331 kb on + strandat 957.331 kb on + strandat 957.331 kb on + strandat 957.332 kb on - strandat 957.332 kb on - strandat 957.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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954,418 + Rru_A0799 0.41 -4.0
954,441 + Rru_A0799 0.42 -0.4
954,441 + Rru_A0799 0.42 +1.8
954,441 + Rru_A0799 0.42 +0.8
954,442 - Rru_A0799 0.43 +1.4
954,442 - Rru_A0799 0.43 -3.7
954,444 + Rru_A0799 0.43 +1.9
954,444 + Rru_A0799 0.43 -2.4
954,444 + Rru_A0799 0.43 -0.2
954,444 + Rru_A0799 0.43 +1.8
954,444 + Rru_A0799 0.43 -1.3
954,444 + Rru_A0799 0.43 +0.2
954,444 + Rru_A0799 0.43 -2.8
954,445 - Rru_A0799 0.43 +0.8
954,445 - Rru_A0799 0.43 -0.9
954,485 + Rru_A0799 0.45 +1.0
954,596 + Rru_A0799 0.52 +1.4
954,597 - Rru_A0799 0.52 -3.0
954,597 - Rru_A0799 0.52 +2.0
954,624 + Rru_A0799 0.54 -1.5
954,625 - Rru_A0799 0.54 -2.6
954,625 - Rru_A0799 0.54 -1.5
954,628 - Rru_A0799 0.54 -2.2
954,628 - Rru_A0799 0.54 -0.2
954,702 + Rru_A0799 0.59 +0.8
954,702 + Rru_A0799 0.59 -1.3
954,703 - Rru_A0799 0.59 +0.8
954,703 - Rru_A0799 0.59 -2.2
954,990 + Rru_A0799 0.77 -3.2
954,990 + Rru_A0799 0.77 +0.4
954,990 + Rru_A0799 0.77 -1.0
954,991 - Rru_A0799 0.77 -0.4
955,065 + Rru_A0799 0.82 +0.2
955,066 - Rru_A0799 0.82 +0.8
955,066 - Rru_A0799 0.82 -1.5
955,206 + -0.3
955,206 + -2.7
955,325 + -0.1
955,325 + -0.4
955,326 - -0.8
955,335 + -3.1
955,356 + +0.2
955,357 - -0.8
955,357 - -2.7
955,357 - +2.3
955,357 - -0.4
955,357 - -2.1
955,357 - +0.8
955,357 - +0.0
955,799 + Rru_A0800 0.41 -1.4
955,825 + Rru_A0800 0.43 +0.6
955,825 + Rru_A0800 0.43 -1.7
955,825 + Rru_A0800 0.43 -2.3
955,826 - Rru_A0800 0.43 -0.2
955,826 - Rru_A0800 0.43 -0.8
955,848 + Rru_A0800 0.45 +0.0
955,896 + Rru_A0800 0.50 +0.8
955,945 - Rru_A0800 0.54 +2.5
956,062 - Rru_A0800 0.65 -0.0
956,064 + Rru_A0800 0.66 +1.4
956,127 + Rru_A0800 0.71 +1.0
956,127 + Rru_A0800 0.71 -1.0
956,127 + Rru_A0800 0.71 -1.0
956,127 + Rru_A0800 0.71 -0.5
956,127 + Rru_A0800 0.71 -2.4
956,128 - Rru_A0800 0.72 -1.8
956,128 - Rru_A0800 0.72 -0.1
956,128 - Rru_A0800 0.72 +1.4
956,232 + Rru_A0800 0.81 +1.8
956,232 + Rru_A0800 0.81 +3.8
956,232 + Rru_A0800 0.81 +0.8
956,233 - Rru_A0800 0.81 +0.2
956,233 - Rru_A0800 0.81 +1.0
956,233 - Rru_A0800 0.81 -0.8
956,233 - Rru_A0800 0.81 -0.1
956,298 + Rru_A0800 0.87 -1.2
956,298 + Rru_A0800 0.87 -2.4
956,298 + Rru_A0800 0.87 +1.8
956,298 + Rru_A0800 0.87 -2.6
956,299 - Rru_A0800 0.87 +0.8
956,299 - Rru_A0800 0.87 +0.8
956,299 - Rru_A0800 0.87 -0.5
956,299 - Rru_A0800 0.87 +0.8
956,299 - Rru_A0800 0.87 +1.3
956,299 - Rru_A0800 0.87 -0.8
956,603 + Rru_A0801 0.20 -4.0
956,690 - Rru_A0801 0.29 -1.7
956,830 + Rru_A0801 0.45 +0.8
956,831 - Rru_A0801 0.45 +1.8
957,331 + +0.7
957,331 + +0.6
957,331 + -2.9
957,331 + -3.0
957,332 - -1.4
957,332 - -0.7
957,332 - +0.3

Or see this region's nucleotide sequence