Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0788 and Rru_A0789 overlap by 32 nucleotides Rru_A0789 and Rru_A0790 are separated by 26 nucleotides
Rru_A0788: Rru_A0788 - ABC transporter component (NCBI), at 941,109 to 942,164
_A0788
Rru_A0789: Rru_A0789 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 942,133 to 942,810
_A0789
Rru_A0790: Rru_A0790 - Phenylacetate--CoA ligase (NCBI), at 942,837 to 944,213
_A0790
Position (kb) 942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.517 kb on + strand, within Rru_A0788 at 942.015 kb on + strand, within Rru_A0788 at 942.016 kb on - strand, within Rru_A0788 at 942.093 kb on + strand at 942.673 kb on + strand, within Rru_A0789 at 942.808 kb on + strand at 942.809 kb on - strand at 942.901 kb on - strand at 942.981 kb on + strand, within Rru_A0790 at 942.981 kb on + strand, within Rru_A0790 at 943.167 kb on + strand, within Rru_A0790 at 943.167 kb on + strand, within Rru_A0790 at 943.168 kb on - strand, within Rru_A0790 at 943.168 kb on - strand, within Rru_A0790 at 943.168 kb on - strand, within Rru_A0790 at 943.168 kb on - strand, within Rru_A0790 at 943.297 kb on - strand, within Rru_A0790 at 943.467 kb on + strand, within Rru_A0790 at 943.468 kb on - strand, within Rru_A0790 at 943.608 kb on + strand, within Rru_A0790 at 943.694 kb on + strand, within Rru_A0790 at 943.694 kb on + strand, within Rru_A0790 at 943.694 kb on + strand, within Rru_A0790 at 943.695 kb on - strand, within Rru_A0790 at 943.695 kb on - strand, within Rru_A0790
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 941,517 + Rru_A0788 0.39 -2.2 942,015 + Rru_A0788 0.86 -0.2 942,016 - Rru_A0788 0.86 -0.0 942,093 + +1.8 942,673 + Rru_A0789 0.80 -0.5 942,808 + -0.1 942,809 - -1.5 942,901 - -1.5 942,981 + Rru_A0790 0.10 -0.1 942,981 + Rru_A0790 0.10 -1.3 943,167 + Rru_A0790 0.24 +0.3 943,167 + Rru_A0790 0.24 -0.2 943,168 - Rru_A0790 0.24 +1.8 943,168 - Rru_A0790 0.24 -0.8 943,168 - Rru_A0790 0.24 -0.4 943,168 - Rru_A0790 0.24 -0.2 943,297 - Rru_A0790 0.33 -3.3 943,467 + Rru_A0790 0.46 -2.4 943,468 - Rru_A0790 0.46 +0.8 943,608 + Rru_A0790 0.56 -0.8 943,694 + Rru_A0790 0.62 +2.0 943,694 + Rru_A0790 0.62 -2.1 943,694 + Rru_A0790 0.62 +0.2 943,695 - Rru_A0790 0.62 +2.5 943,695 - Rru_A0790 0.62 -0.1
Or see this region's nucleotide sequence