Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0743

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0742 and Rru_A0743 are separated by 345 nucleotidesRru_A0743 and Rru_A0744 are separated by 14 nucleotides Rru_A0742: Rru_A0742 - Ubiquinone biosynthesis O-methyltransferase (NCBI), at 867,568 to 868,317 _A0742 Rru_A0743: Rru_A0743 - Aspartate kinase (NCBI), at 868,663 to 869,883 _A0743 Rru_A0744: Rru_A0744 - 2-nitropropane dioxygenase, NPD (NCBI), at 869,898 to 870,962 _A0744 Position (kb) 868 869 870Strain fitness (log2 ratio) -1 0 1at 868.644 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
868,644 - -0.2

Or see this region's nucleotide sequence