Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0742

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0741 and Rru_A0742 are separated by 256 nucleotidesRru_A0742 and Rru_A0743 are separated by 345 nucleotides Rru_A0741: Rru_A0741 - Signal Transduction Histidine Kinase (NCBI), at 865,815 to 867,311 _A0741 Rru_A0742: Rru_A0742 - Ubiquinone biosynthesis O-methyltransferase (NCBI), at 867,568 to 868,317 _A0742 Rru_A0743: Rru_A0743 - Aspartate kinase (NCBI), at 868,663 to 869,883 _A0743 Position (kb) 867 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 866.678 kb on + strand, within Rru_A0741at 866.711 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.724 kb on - strand, within Rru_A0741at 866.724 kb on - strand, within Rru_A0741at 866.725 kb on + strand, within Rru_A0741at 866.725 kb on + strand, within Rru_A0741at 866.726 kb on - strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.035 kb on - strand, within Rru_A0741at 867.035 kb on - strand, within Rru_A0741at 867.035 kb on - strand, within Rru_A0741at 867.188 kb on - strandat 867.188 kb on - strandat 867.229 kb on - strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.447 kb on - strandat 867.450 kb on + strandat 867.450 kb on + strandat 867.450 kb on + strandat 867.490 kb on + strandat 868.644 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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866,678 + Rru_A0741 0.58 -0.5
866,711 + Rru_A0741 0.60 -1.5
866,723 + Rru_A0741 0.61 -1.1
866,723 + Rru_A0741 0.61 +4.2
866,723 + Rru_A0741 0.61 -3.2
866,723 + Rru_A0741 0.61 -1.6
866,724 - Rru_A0741 0.61 -1.0
866,724 - Rru_A0741 0.61 -0.3
866,725 + Rru_A0741 0.61 -2.2
866,725 + Rru_A0741 0.61 -0.5
866,726 - Rru_A0741 0.61 -1.7
867,034 + Rru_A0741 0.81 +1.4
867,034 + Rru_A0741 0.81 -0.5
867,034 + Rru_A0741 0.81 -1.8
867,034 + Rru_A0741 0.81 -2.9
867,035 - Rru_A0741 0.81 +1.2
867,035 - Rru_A0741 0.81 -2.9
867,035 - Rru_A0741 0.81 +4.4
867,188 - -1.2
867,188 - +2.8
867,229 - +1.6
867,446 + -0.8
867,446 + -1.2
867,446 + -1.4
867,446 + -1.3
867,446 + -3.1
867,446 + -1.8
867,446 + +1.7
867,447 - +0.8
867,450 + -1.1
867,450 + -1.0
867,450 + -2.7
867,490 + +0.8
868,644 - -0.2

Or see this region's nucleotide sequence