Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0741 and Rru_A0742 are separated by 256 nucleotides Rru_A0742 and Rru_A0743 are separated by 345 nucleotides
Rru_A0741: Rru_A0741 - Signal Transduction Histidine Kinase (NCBI), at 865,815 to 867,311
_A0741
Rru_A0742: Rru_A0742 - Ubiquinone biosynthesis O-methyltransferase (NCBI), at 867,568 to 868,317
_A0742
Rru_A0743: Rru_A0743 - Aspartate kinase (NCBI), at 868,663 to 869,883
_A0743
Position (kb)
867
868
869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 866.678 kb on + strand, within Rru_A0741 at 866.711 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.723 kb on + strand, within Rru_A0741 at 866.724 kb on - strand, within Rru_A0741 at 866.724 kb on - strand, within Rru_A0741 at 866.725 kb on + strand, within Rru_A0741 at 866.725 kb on + strand, within Rru_A0741 at 866.726 kb on - strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.034 kb on + strand, within Rru_A0741 at 867.035 kb on - strand, within Rru_A0741 at 867.035 kb on - strand, within Rru_A0741 at 867.035 kb on - strand, within Rru_A0741 at 867.188 kb on - strand at 867.188 kb on - strand at 867.229 kb on - strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.446 kb on + strand at 867.447 kb on - strand at 867.450 kb on + strand at 867.450 kb on + strand at 867.450 kb on + strand at 867.490 kb on + strand at 868.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 866,678 + Rru_A0741 0.58 -0.5 866,711 + Rru_A0741 0.60 -1.5 866,723 + Rru_A0741 0.61 -1.1 866,723 + Rru_A0741 0.61 +4.2 866,723 + Rru_A0741 0.61 -3.2 866,723 + Rru_A0741 0.61 -1.6 866,724 - Rru_A0741 0.61 -1.0 866,724 - Rru_A0741 0.61 -0.3 866,725 + Rru_A0741 0.61 -2.2 866,725 + Rru_A0741 0.61 -0.5 866,726 - Rru_A0741 0.61 -1.7 867,034 + Rru_A0741 0.81 +1.4 867,034 + Rru_A0741 0.81 -0.5 867,034 + Rru_A0741 0.81 -1.8 867,034 + Rru_A0741 0.81 -2.9 867,035 - Rru_A0741 0.81 +1.2 867,035 - Rru_A0741 0.81 -2.9 867,035 - Rru_A0741 0.81 +4.4 867,188 - -1.2 867,188 - +2.8 867,229 - +1.6 867,446 + -0.8 867,446 + -1.2 867,446 + -1.4 867,446 + -1.3 867,446 + -3.1 867,446 + -1.8 867,446 + +1.7 867,447 - +0.8 867,450 + -1.1 867,450 + -1.0 867,450 + -2.7 867,490 + +0.8 868,644 - -0.2
Or see this region's nucleotide sequence