Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0736

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0734 and Rru_A0735 are separated by 28 nucleotidesRru_A0735 and Rru_A0736 are separated by 23 nucleotidesRru_A0736 and Rru_A0737 are separated by 67 nucleotidesRru_A0737 and Rru_A0738 are separated by 87 nucleotides Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503 _A0734 Rru_A0735: Rru_A0735 - Sugar fermentation stimulation protein (NCBI), at 861,532 to 862,269 _A0735 Rru_A0736: Rru_A0736 - hypothetical protein (NCBI), at 862,293 to 863,219 _A0736 Rru_A0737: Rru_A0737 - Phosphoribosyltransferase (NCBI), at 863,287 to 864,027 _A0737 Rru_A0738: Rru_A0738 - Glutaredoxin, GrxC (NCBI), at 864,115 to 864,381 _A0738 Position (kb) 862 863 864Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 861.371 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.425 kb on - strand, within Rru_A0734at 861.605 kb on + strandat 861.606 kb on - strand, within Rru_A0735at 861.606 kb on - strand, within Rru_A0735at 861.651 kb on - strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.711 kb on - strand, within Rru_A0735at 861.711 kb on - strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 862.044 kb on - strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.223 kb on + strandat 862.223 kb on + strandat 862.224 kb on - strandat 863.229 kb on + strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.548 kb on + strand, within Rru_A0737at 863.549 kb on - strand, within Rru_A0737at 863.716 kb on + strand, within Rru_A0737at 863.717 kb on - strand, within Rru_A0737at 863.717 kb on - strand, within Rru_A0737at 863.718 kb on + strand, within Rru_A0737at 863.718 kb on + strand, within Rru_A0737at 863.719 kb on - strand, within Rru_A0737at 863.719 kb on - strand, within Rru_A0737at 864.064 kb on + strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.065 kb on - strandat 864.067 kb on - strandat 864.068 kb on + strandat 864.068 kb on + strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.069 kb on - strandat 864.110 kb on + strandat 864.111 kb on - strandat 864.155 kb on - strand, within Rru_A0738at 864.199 kb on + strand, within Rru_A0738

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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861,371 + Rru_A0734 0.71 +1.5
861,371 + Rru_A0734 0.71 +1.8
861,371 + Rru_A0734 0.71 -1.3
861,372 - Rru_A0734 0.71 +1.0
861,372 - Rru_A0734 0.71 +1.7
861,372 - Rru_A0734 0.71 -0.4
861,372 - Rru_A0734 0.71 -0.4
861,372 - Rru_A0734 0.71 +1.6
861,372 - Rru_A0734 0.71 -0.5
861,374 - Rru_A0734 0.71 +0.2
861,374 - Rru_A0734 0.71 +0.1
861,374 - Rru_A0734 0.71 -1.3
861,425 - Rru_A0734 0.83 -2.4
861,605 + +0.7
861,606 - Rru_A0735 0.10 +0.5
861,606 - Rru_A0735 0.10 -2.8
861,651 - Rru_A0735 0.16 -0.0
861,710 + Rru_A0735 0.24 +0.7
861,710 + Rru_A0735 0.24 +0.3
861,710 + Rru_A0735 0.24 -1.5
861,710 + Rru_A0735 0.24 +0.6
861,711 - Rru_A0735 0.24 +1.1
861,711 - Rru_A0735 0.24 +9.4
861,857 + Rru_A0735 0.44 +0.8
861,857 + Rru_A0735 0.44 +0.6
861,857 + Rru_A0735 0.44 -2.3
861,858 - Rru_A0735 0.44 -1.0
861,858 - Rru_A0735 0.44 -2.0
861,858 - Rru_A0735 0.44 -0.5
861,858 - Rru_A0735 0.44 -1.0
861,858 - Rru_A0735 0.44 -3.6
862,044 - Rru_A0735 0.69 +1.3
862,076 + Rru_A0735 0.74 -0.5
862,076 + Rru_A0735 0.74 +1.2
862,076 + Rru_A0735 0.74 -0.8
862,076 + Rru_A0735 0.74 -1.1
862,076 + Rru_A0735 0.74 -2.1
862,077 - Rru_A0735 0.74 +0.0
862,077 - Rru_A0735 0.74 +0.9
862,077 - Rru_A0735 0.74 +1.3
862,077 - Rru_A0735 0.74 -0.3
862,077 - Rru_A0735 0.74 -2.2
862,077 - Rru_A0735 0.74 -1.5
862,077 - Rru_A0735 0.74 -2.6
862,223 + +0.4
862,223 + +0.3
862,224 - +1.1
863,229 + -1.7
863,230 - -0.2
863,230 - +0.5
863,230 - -1.9
863,232 - -2.1
863,232 - -2.4
863,232 - -1.5
863,232 - -3.6
863,548 + Rru_A0737 0.35 -2.9
863,549 - Rru_A0737 0.35 +1.1
863,716 + Rru_A0737 0.58 -1.4
863,717 - Rru_A0737 0.58 -0.0
863,717 - Rru_A0737 0.58 +0.8
863,718 + Rru_A0737 0.58 -3.5
863,718 + Rru_A0737 0.58 -1.1
863,719 - Rru_A0737 0.58 -1.7
863,719 - Rru_A0737 0.58 +0.7
864,064 + -2.2
864,065 - -3.2
864,065 - -0.9
864,065 - -3.6
864,065 - -2.2
864,067 - -2.1
864,068 + -1.8
864,068 + +0.8
864,069 - +0.5
864,069 - -4.5
864,069 - -0.7
864,069 - -3.5
864,110 + -3.0
864,111 - -1.1
864,155 - Rru_A0738 0.15 -2.4
864,199 + Rru_A0738 0.31 -2.0

Or see this region's nucleotide sequence