Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0729 and Rru_A0730 overlap by 4 nucleotides Rru_A0730 and Rru_A0731 are separated by 166 nucleotides Rru_A0731 and Rru_A0732 are separated by 87 nucleotides Rru_A0732 and Rru_A0733 overlap by 4 nucleotides
Rru_A0729: Rru_A0729 - Short-chain dehydrogenase/reductase SDR (NCBI), at 856,840 to 857,619
_A0729
Rru_A0730: Rru_A0730 - hypothetical protein (NCBI), at 857,616 to 858,434
_A0730
Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302
_A0731
Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121
_A0732
Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933
_A0733
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 857.711 kb on + strand, within Rru_A0730 at 857.711 kb on + strand, within Rru_A0730 at 857.712 kb on - strand, within Rru_A0730 at 857.712 kb on - strand, within Rru_A0730 at 857.712 kb on - strand, within Rru_A0730 at 857.712 kb on - strand, within Rru_A0730 at 857.712 kb on - strand, within Rru_A0730 at 857.712 kb on - strand, within Rru_A0730 at 857.713 kb on + strand, within Rru_A0730 at 857.713 kb on + strand, within Rru_A0730 at 857.713 kb on + strand, within Rru_A0730 at 857.713 kb on + strand, within Rru_A0730 at 857.714 kb on - strand, within Rru_A0730 at 857.886 kb on + strand, within Rru_A0730 at 858.023 kb on + strand, within Rru_A0730 at 858.024 kb on - strand, within Rru_A0730 at 858.042 kb on - strand, within Rru_A0730 at 858.042 kb on - strand, within Rru_A0730 at 858.128 kb on - strand, within Rru_A0730 at 858.156 kb on + strand, within Rru_A0730 at 858.156 kb on + strand, within Rru_A0730 at 858.156 kb on + strand, within Rru_A0730 at 858.156 kb on + strand, within Rru_A0730 at 858.157 kb on - strand, within Rru_A0730 at 858.157 kb on - strand, within Rru_A0730 at 858.157 kb on - strand, within Rru_A0730 at 858.157 kb on - strand, within Rru_A0730 at 858.157 kb on - strand, within Rru_A0730 at 858.268 kb on + strand, within Rru_A0730 at 858.268 kb on + strand, within Rru_A0730 at 858.268 kb on + strand, within Rru_A0730 at 858.268 kb on + strand, within Rru_A0730 at 858.269 kb on - strand, within Rru_A0730 at 858.601 kb on - strand at 858.659 kb on + strand at 858.659 kb on + strand at 858.660 kb on - strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.301 kb on - strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.334 kb on - strand at 859.373 kb on - strand at 859.392 kb on - strand at 859.392 kb on - strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.555 kb on + strand, within Rru_A0732 at 859.555 kb on + strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.557 kb on + strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.731 kb on - strand, within Rru_A0732 at 859.969 kb on + strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 860.048 kb on + strand at 860.048 kb on + strand at 860.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 857,711 + Rru_A0730 0.12 -1.3 857,711 + Rru_A0730 0.12 -1.8 857,712 - Rru_A0730 0.12 +1.8 857,712 - Rru_A0730 0.12 -0.2 857,712 - Rru_A0730 0.12 -0.5 857,712 - Rru_A0730 0.12 -3.0 857,712 - Rru_A0730 0.12 -1.0 857,712 - Rru_A0730 0.12 +0.5 857,713 + Rru_A0730 0.12 +1.0 857,713 + Rru_A0730 0.12 +0.2 857,713 + Rru_A0730 0.12 +1.4 857,713 + Rru_A0730 0.12 +0.2 857,714 - Rru_A0730 0.12 -2.4 857,886 + Rru_A0730 0.33 +0.4 858,023 + Rru_A0730 0.50 +0.2 858,024 - Rru_A0730 0.50 -1.1 858,042 - Rru_A0730 0.52 -1.0 858,042 - Rru_A0730 0.52 +0.0 858,128 - Rru_A0730 0.63 +3.2 858,156 + Rru_A0730 0.66 -1.8 858,156 + Rru_A0730 0.66 -2.1 858,156 + Rru_A0730 0.66 -1.8 858,156 + Rru_A0730 0.66 -1.9 858,157 - Rru_A0730 0.66 -1.3 858,157 - Rru_A0730 0.66 +0.2 858,157 - Rru_A0730 0.66 -2.9 858,157 - Rru_A0730 0.66 +0.2 858,157 - Rru_A0730 0.66 -2.9 858,268 + Rru_A0730 0.80 -0.2 858,268 + Rru_A0730 0.80 -0.5 858,268 + Rru_A0730 0.80 -0.3 858,268 + Rru_A0730 0.80 -0.5 858,269 - Rru_A0730 0.80 -0.5 858,601 - -1.2 858,659 + -1.7 858,659 + -3.6 858,660 - +2.3 859,300 + +1.0 859,300 + -1.1 859,300 + +1.6 859,301 - -2.4 859,333 + +2.1 859,333 + -0.4 859,333 + +0.5 859,333 + -0.2 859,333 + -1.2 859,334 - -0.5 859,373 - -0.8 859,392 - -0.4 859,392 - -2.4 859,443 + -0.9 859,443 + +0.2 859,443 + -1.2 859,443 + +1.3 859,444 - -0.2 859,444 - -0.2 859,444 - +0.3 859,444 - +0.7 859,444 - +0.7 859,444 - -2.5 859,555 + Rru_A0732 0.23 -0.5 859,555 + Rru_A0732 0.23 +0.1 859,556 - Rru_A0732 0.23 -1.2 859,556 - Rru_A0732 0.23 -0.5 859,557 + Rru_A0732 0.23 +0.9 859,558 - Rru_A0732 0.23 -0.1 859,558 - Rru_A0732 0.23 +1.1 859,558 - Rru_A0732 0.23 +1.8 859,731 - Rru_A0732 0.47 +1.3 859,969 + Rru_A0732 0.79 +0.8 859,970 - Rru_A0732 0.79 -1.0 859,970 - Rru_A0732 0.79 +1.6 859,970 - Rru_A0732 0.79 +0.2 859,970 - Rru_A0732 0.79 -0.0 860,048 + +2.5 860,048 + +0.9 860,049 - +2.4
Or see this region's nucleotide sequence